LOC111193204


Basic Information

Item Value
gene id LOC111193204
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 15507380 ~ 15542286 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022672782.1
AAGAATATTGTGATACGATTTCAAGCACCCCTAAAGTGGATCATACCATTCCATGTTAATCAGCGTTCCTCTCGTTCACCTGCCTGCCTGGTTCATTATTGGTCACGTGGTTTGCGTTTATGTTAAGGTGCACAAGCTGCTCAAGCTACAGCGTTACGTTGATCACTGATGTCCATAAGCTCCAAATCTCACCTGGAAAATCCTGTGTgacagttcagcagagctgcAGGTCTTAAGCCAGGCTAAGTAAACATATGGTGAGGAGATGATTGTCCAACCAGCAGCACTTTCTATCAACTCTCCTCAGAGCTAACGGGATAAAACCCAGCGCACTGACACGTCTGAACATATGTGAGCCTGATTTACCACTTAAACCCCAGCAGGGTGTAAAACCACAAGCAGTCAGTGTACAAACTTGACGCCTACAAAGGGTGGTGCAGAGTCTGACGGGAGGTACTGAGGGTCTGCAGGAAGACCTGGAGGAAGAGCTCTTTTCTGACTgaaaaacttttaaagaaaCAACAGCATGTCTCCAACCACACGCAATCAGAACTGCGAGGACCTCCAGGTTGCTGGCTATCCCATCATGAGGACCCAGAAGCTGGAGGCCAGTGAGCTCCAGGCTCTGTATGGAGAGGACcgagatgaagatgaagaacaGCAGGTCGAGGTTGAGTTACCTGGTGAACGCATAGCTGAAGAAGGTGTGAATGAGTTCACGTATCTTTCTGATATGCCCCCCCACTCTCGCCGACAGTCCTACAGACAAGTGCTGCACAAAGAGGTGTTCTTTTCTAATGAAGCGTATTACTGTAGACTGGAGGAGCTGAAGAAAACCCACCTGAAGAACATCGCTGACCTCCAGAGACTCTACCTGAACCAGGTCGCCTCGGCCCAGAAGGACAGACAGCTGGAGGATAAAGACCAGGACACCAGGGAACAGGTGGCATCAAGGCCTCAGCCAAGAGACGACACTCATCAGAAGCTTATCGGCTCGGACCAATCCGACACCTCCGTGGAGGAACAGGTGTCTGAGCCGGAGGATGAGCCTGAATGGGAAAACCCTCGCAGGGAACCACATGTCAAGCAGGCACTTCTGACTCCACCCACCAATCCCCCACCACAGAAAAACTGGTGTCCCTTCCTGAAGATCTCCTCGTCTCCAAGCCCGGCCAATCAGCAGTCACGCCAGGTGGAGAAGGTGGACACACGGAGGCGGGGGTCGAAAGTGACCATCCCTCAGCCCTTCCATATGACTCTTCGGGAGGAGGAGCGAAAGCTTCACAGGGTGAAGACTCGCTCAGAGGTGGAGTTGGAGAACGAGCGTCTCAGGAAAGAGCTGGATGAGCTGAAAGAGTGTGGCAGGAAGTTCCGGGCCACTCCTGCCCCTGTCTCCACCCACCTGGCTCCCTACGAGATTGTCAAGACCTGTCACAGCCACCGGCAGCCAGACAAAGAGCATGTTGCTGAGCGTCCTGTCGATGGTCATCTTGGAAGCCACCGTCTCCAAAAGAAACCATCTCAAAGACGTTGTGCACAGGAGAAACCATCCCACAGGCGTCGTGTCCAGAACAAAGCATCTCCAGGACATTGCATCAAGGACAAATCAGTACCAGGTCGTCGTCTCCAGGCCAAACGCCACAgcgctcctcctcttcctcagcaGCCCTTCAGCTTCATCGAGAGAGaacgaaaaaagaaagagatgaagCTTTTGGCGGAGCTGAACAATCTGACTCCTCGAGAGGAACGCAGGGTTTTCAAGGCCAGACCGGTGCCCAGATCTCTCTACCGATGCAATTCGCAAGACTTCCAGCTGTACGGTGCAATCAGTCTGCACAGCAGAGCCCAGGAGCACAGGCTGAGCTCGACAGCACCATCTGACTTCTTTGAGGAGTCACAGCAAGAGGAGGAAGTGGATGAGGAAGAGGGAAACGAGGATAATGAGGTTTTTCTGCCACACAGAGGCTGGGGAGAGAAGATGAAGAAGGTGAAGAAAGAGCAAaatggggagagagaaagggactGGTCTTATATCCATCCTCTACGCCGAGCCAGCGCCAGCCAGAGTCAGGAAGTTCTGCCAGCCTGCAAGTCCGATTACATTAGTGTTAAAATGTCTAGTGAATGTTCTGTATGGTAGACGTACATGTACACTAAATCAAGTACACTATATGGAATAAGGTATCGGAGTACACGTCTTAGACATTGAATTCAGGAATTTAAGCCCCTAGTCATGCAGTCTGCctttacaaacattagtgagaGAATGGATGGTTGTTGAATGGATGGCTTATTGAACTAACCAGTGTGGTTCTGTAATAGGATGGCACCGCTTAGGGCCGTTTTAAGGCATCTGGGGCCCCCAAGCTCAACTGACTAGACTGCCAGGCTACTAGCGTAGCTAACATAATCCATTCGCCGTGACATGATACTGAAGAATATCTTCCCTTCTGTACTTAGCAGTAAGATGCTCCGAAACTGGCCCAGGTTTTTAGAGTTCTCCTCTTTAGGGATCCACACACCCTCTGCACATCTTCACTGGTTGGCAACTCTTCTTCAATGCCAGACTTCTCTTTTAGGATCTTCCATAACTGCCCCTCAGTGGGTCCAGCGGCTGAGGCTTATGGTGGGGCTGGATTTATCAGAGCATTGTTGTGGCCAAGATCCCAGTCTCTTTCTGGGTCACTCAAGGTGTGGTGAAGGAAGGTGTTAACATCTTGTGCAGAGCACTTCAGCTAGCTGCTGCGCTTGTCACCAAGCAATTTCCTGTCGAAGCCAAattgttcatccatcttcctttttcctcttttttttctggcttCCTGATGGATAACTCCATTGCTTCATAATTGCTGAAGGTTCATATTTTGCCTGCTGCAGGAATTTCAAACTTTGCTGGCTGTCTGGCTACTTTCAGTAAGTAGTGGGAGGCGCCCACTTAAGAGGGATTCTGATGACAGTGTCATTGTACTTTCCTGAATTGACCATTGAAGAATTTAAAGGGCCGCTCACACAGTTTATAGTTGTattcaattcataaccagtcattGTCTGGTTGCCCAATGCCAGCTTGGAGCCTTGGGCAATTAATTGGTTTGCTTACCCTGTTGCAACGTGTCTGGCACTGCTATAACAAGTCAGCTGGTGAACTTTCTTTCCTCTAACATATTCCACAATTAGCTGTGAGTGATTATAGTTATTGAAAAGTTAAAGGAACCAATTACAGAGCAAGGTACTCAAGTGCTGATCAATAACTGCAGAGCTCCTCACCTGACCGGACAGACTCCACACTAATCCCTATAGACTTATAATGGGATAAAATCATAAAAGCTCCAGTAGGTGTAATGTGTAGGTGCCCCAATACTTTGGTCTATATAGTTTTAGCTAAGATATTAGTAAATTGCATTGCTAAATAGTCCAGCTATACGCCTCCTCTGATGCACAACCTCTTCTCAAACTGCTGACTGATTACAGAAAGCCggaaagcaccagatccccagctctgatacatcagctaacagacgacTGTGCCGCTCAGCATTACAAAGCGAATGATCAAGGGGAAAAAGTGCTGTGATCAGTTGTGTGCTTGAGCTCTGACTGCATGaacagtcccctccaaaagtattagaacagtgaagccaatccctttatttctgctgcaaCAAACCTATCAAACGTTGCTCTGGAAAATTGGCAGGAAAATTGTTTGAATTCCCCTTTAATGGTAATATTGGTGCTTTAGATTAGCCAATTTAGCCACATTTGTAGCTATGTGGTTCTGGTGAAATGATGCTAGCCTaacagacattttaaaattactaaattaaatgtttaagagTTTTAATAGTAGAAAAACTGTTTAGAGCTTCCGTATTTTgctttattacttattttatacttAAGTTCATGATTGACGTATGATGTGATTTACAATTTGTAATGGAAATGAA

Function

GO:

id name namespace
GO:0044427 obsolete chromosomal part cellular_component
GO:0005694 chromosome cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022672782.1 True 3956 mRNA 0.47 5 15507380 15542286

Neighbor

gene id symbol gene type direction distance location
wdpcp wdpcp coding upstream 354899 15024469 ~ 15152481 (+)
peli1 peli1,peli1b,LOC107715974,LOC107583279,LOC107654901,LOC107670869,LOC107583565 coding upstream 556301 14892427 ~ 14951079 (+)
LOC103032735 LOC103032735,LOC108431665,LOC108270066,LOC107715976,LOC107583272,LOC107720922,LOC107670885,LOC107583566,LOC107654900 coding upstream 627674 14836482 ~ 14879706 (+)
LOC111193201 NA coding upstream 741357 14763570 ~ 14766023 (+)
entpd6 entpd6 coding upstream 784703 14695593 ~ 14722677 (+)
eno4 NA coding downstream 140087 15682373 ~ 15704118 (+)
pla2g4f NA coding downstream 322197 15864483 ~ 15891088 (+)
kcnk18 NA coding downstream 355238 15897524 ~ 15920726 (+)
LOC103040417 ctsb,LOC108433939,LOC107733172,LOC102299207,LOC107752788 coding downstream 397117 15939403 ~ 15947994 (+)
LOC111193130 NA coding downstream 884239 16426525 ~ 16440795 (+)
G80787 ehbp1 non-coding upstream 248033 15254414 ~ 15259347 (+)
G80745 NA non-coding upstream 414171 15091192 ~ 15093209 (+)
LOC111193202 NA non-coding upstream 537435 14963233 ~ 14969945 (+)
G80674 NA non-coding upstream 542626 14964079 ~ 14964754 (+)
G80663 NA non-coding upstream 642017 14822876 ~ 14865363 (+)
G80864 NA non-coding downstream 56393 15598679 ~ 15620782 (+)
G80867 NA non-coding downstream 81553 15623839 ~ 15624119 (+)
G80868 NA non-coding downstream 88882 15631168 ~ 15631558 (+)
G80869 NA non-coding downstream 122460 15664746 ~ 15664954 (+)
G80881 NA non-coding downstream 167299 15709585 ~ 15711163 (+)
LOC111193203 NA other upstream 303593 15174535 ~ 15203787 (+)
LOC111188193 LOC108431664 other upstream 672301 14806315 ~ 14835079 (+)
LOC111193140 NA other upstream 704348 14788602 ~ 14803032 (+)
LOC103029370 pygb,LOC107553065,LOC107663289,LOC107671137,LOC107717055,LOC107583638 other upstream 708776 14730508 ~ 14798604 (+)
G80648 NA other upstream 778581 14725927 ~ 14728799 (+)
G80857 NA other downstream 21701 15563987 ~ 15583331 (+)
cmpk2 cmpk2 other downstream 2485021 18027307 ~ 18037074 (+)
LOC103035760 rtkn2,rtkn2a other downstream 2917837 18460123 ~ 18469635 (+)
LOC103033848 LOC108435752 other downstream 2969336 18511622 ~ 18520947 (+)
G81704 NA other downstream 3387952 18930238 ~ 18930754 (+)

Expression


Co-expression Network