LOC103021824 (efr3b,LOC107697777,LOC107752767,LOC107592778)


Basic Information

Item Value
gene id LOC103021824
gene name efr3b,LOC107697777,LOC107752767,LOC107592778
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 16687918 ~ 16713041 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022672824.1
GGCGTGGCCATTGGAGGGATGCAGGAGTGGGCGGGGCCGTTCTGTCAGAACCGAACTCAGAGCTCAGAACTCTCAAACCCGAACTGCACACAGCCTTCAGCGAACTATACTAACTACATTAACTTTACACAGCCTAAAATGCCTCTCCCACACCTCACCCTACCCAGCCTCACCCTACCCAACTTCACCTTACCCAACCTCACCTTACCGAACCTCCCGAGTGTTCCTAATGTTCTGCGTGTTCCGAGTCCTCGCGCGCTGTTCCTGGACTGCAGCAGTGTGTTGGATCATGGAGTTTGGAGTGGTGTGTGCGGTTGCTGCGGGGCTTTAAGGCCCCGCTATAAGAGGCTGGTGGATAACATTTTTCCAGAAGATCCAGagGATGGATTGGTAAAGGCTAATATGGAAAAGCTGACATTTTATGCTCTATCTGCTCCTGAGAAGTTGGACCGGATCGGGGCTTATCTGTCAGAGAGGCTCTCCAGAGATGTGGCTCGCCACCGATATGGatATGTGTGCATCGCAATGGAGGCTTTGGATCAGCTTCTGATGGCTTGTCACTGCCAGAGCATTAACCTGTTTGTGGAAAGCTTTCTCACCATGGTGCGGAAACTCCTTGAGGCCGACAAACCCAACCTGCAGATCCTGGGCACCAACTCTTTTGTGAAGTTTGCGAATATTGAAGAGGATACGGCATCGTATCACCGGAGCTACGACTTCTTCATCTCCCGGTTCAGTGAGATGTGCCACTCAGGCTATGAAGATCCAGATATTCGCACCAAgatTCGGATGGCGGGGATTCGGGGTCTGCAGGGTGTGGTGAGGAAGACGGTAAACGATGAATTGCAGGCAAACATCTGGGATCCTCAGCACATGGACAAGATAGTGCCATCCCTCCTGTTTAATCTACAGCAGGACCAGATCCCAGACAGgtGTGCTGAGGGCGATAAGGATGGTACGGTGGATCTAACAGAGAGGTGTCTGAGGGAGCTGCTGGGTCGGGCTGTTTATGGAAACATAAAGAATGCAGTTAAACCCGTCCTGATGCACCTGGATAATCATTCTCTGTGGGAGGGGAAAAGCTTTGCTGTTCGCTGCTTTAAAATCATAATGTACTCCATTCAGTCCCAGCATTCCCACCTGGTCATCCAGCAGCTGCTCGGTCATTTAGATGCCAACAGTAAGAGCTCGGCGACGGTGCGAGGCGGGATTGTGGAGGTGATTTCTGAAGCAGCGGTGATCGAGGCCAGCGGTTCAATCGggccGACAGTGTTGGAAGTGTTTAACACTCTGCTGAAGCAGCTGCGTCTGAGTGTGGACTATGAGCTGGGTGGTGGGTGCAGTGGCAGCGGTGGTGGCGGGGGGCTGCTCAGGGTACAGGAGGAGAGGCAGCTGCAGGAGTCGGTCATCAGGACCGTGGGTTCGTTTGCCGGCACTCTGCCCACCTACCAGCGCTCAGAGGTCATGCTCTTTATCATGGGCAAGATTCCTGTCCCGGGCATGTATCCTACGCTGGGTTCCTCCAACTCAGGGTTTGAGGGCAGCAGGATGATCCAGATTATGCTTCTGAAATCACTGCTGCAGGTGACGGTGGGTTTCCAGACGACGAATATGTTGACGGCTCTGCCGAGTTCGTTTCTGGATCCTCTGCTGTCCTTCACGCTGATGGAAGATGCTGAGATTCGTCTGCTGGTTCTGGAGATCCTCATCAGTCTCATCGATCGCCATGAGAACCAGCTGAAGTTCTCTCTGAGAGTACTGACTGACATTTCTGTGCTGAAGCTGAAAATGGACAAGTGCTCACGACAAGATAATCTGTTCATGAAGAAGCACTCTCAGAGACTGTACCGCCACGTCTACCTGGCCTGCAGAGAGGAGAACAGTGAACAGCAGCACTTCCAGTCCCTGTTCACTCTGCTGGGGCTCATCTGTGTAGAACTCGCCAAcgaggaggtggtggtggacCTCATCCGCCTCGCTCTAGCACTGCAGGATCTGGCTGTAACTGAAGAGGCTCTTCCTGTGTTTAACCGCTGCGCTGTCCACGCTCTGTCAGCGGCATATTTAAACCTAATCAGTCAGCTGACCACCGTGCCCACCTTCTGCCAGCATGTGCACGagGTGATTGAATTGAGGCAGAAAGAGTTTCCCTTCCTGCTGCCGGAGGGTGTCTTCGCTGAGGCTGAGAAGCTGCCAGAGAAGCTGGAGAAGGTGGAGAAGGTGGAGGGCGAGTTCCTGTTCTCCCAGTCTAAGATAGCGGAGACACTGGGTGGGAGCGGCTATAACTCTGACAGACTGGTCACTCCGTACATTCCCCAGATCACAGAAGAAGACAGACTCTCCAAAAGGAAGAGCATCGTGGACACCATCTCTCTACAGCTGGATGTGGAGTCCAGACTCAGCCCAGAGAAAGAACAGAAATCTCCAGCTGAGCAGATCACATTCGAATCCCTTAAACAGGCCATCGcagacggtgtgtgtgtggaggagcaggAGCGTGAGCGCAGGCGGCTGGTGGTGGAAAGGTTCCAGACGGCTCCGTTTGAGGAGATCGCGGCTCACTGTGGGGCGCGGgCTTCACTGCTGCAGAACAAACTCAACCAAATATTTGAAATCACGATcaggCCTCCCCCAAGTCCTTCTGGATCCATTGGGAATGGGAGCGGGCCAAGCCGCTCAGTACCGGTGTATGATATGAAGTTCCCAGACCTGTGTGTTTACTGAACCTGCAAATACAGCTCCCTCATGCCACAGCTGATGATCTAAGCCATGTTTTTCCTGTGGGGTGAAAGTGACAcctcattttttaataatttaagtgtattttgTTGTGTTCCACGGGTTCCGTGGTTCAGGAGTTGTTTACTGGAGTCAGGCAGGTGAATTTCCTGCACATttctaattaaatgtttttcatgaGCTGCAAAAAAGTCGTACTCGGAAGCAATAATATTTGGCCAAACCGCTCTCTGCTAAAGCAGAGGATTCTggtttattaacaataataggtTAAATAATAGCAGACACTGATTTAAACCTAGTTGATATGTAAAACCATGCACATCCACCACTGTGTtagagctgtgtattggcaagaacttggtgaGACTGTATGTCACTATACAGGGGTTACCATTTAATAATTAAGTCGATATAGTGATTCTTTaaatcaaaaattaaaaaaattaagtataatAGCACACTAATATATGTATAAAgtctaaataaaagaaaagtttattcaTGTTGGTGTATAAGGAATGTTTACCTACAAAAGAAACTTAATAGTATTTTAAAGACTCAGCTCCCTCTGCAGCTCCAGCTCTGTGCAGATCTCTGATCTGTCCTCAAACACTGTCCTTTTTTAACTCAGTTAAACTCAGCTAATCAACTTTAACCAGATTTCAACACACAAGCAGCTACACATCACACTTTACCTACTGAGTTATCTAACCCAGTACACGCTGATTCAGCTTCCAACAACAGAGCTTACAGTTTCATTACACTGCTAAAATACAGGAGTatgaataaagtaaatacaattgggaaataagtatttgattcGCTGCTAAGAGTTCTGTAATTGTATTGTAGATTCACTTCAACTGTAAGAGAGAtatatgtatgatttttttaatcatatatttgcattttcttGCATGAAATAAGTATATGCCCATCAACCAGCAGCTATTCTGTTTCTCATAAAATCTCTTCTTGTGGCGTAATGATGAATCTGAGAAGGTCAGGAATCAGCTCGGAACTAAAGGGAGTACCTGGTTAATGACCTAAAGAGAGCTGGAATCACAGTCTCCACTCGGCGcatccagcatgacaatgacccaaaatacACAGTCAGGGCAACTAAGTAATGGCTCTGTAAGAAGCATTTCAATGTcctggagtggcctagccagtctccagacctgaacccaacaGAAAATCTTTGGAGGGAGCTGAAACTCAATGTTGCCCAGCAACAGCCCCGAAACCTGAAAGATCTGGAGAAGATCTAAATAGAGGAGTCGGGGTAAACTTGGTCAAGAACAACAGAAAATGTTTGTCACTGTAATAACAAAAGggttttaaaaccaaaaatgtatttctttcttttgtgtcaaatagttatttattgtaataaaatattacttatttatttttttacaaaatcattcaatgttattttctggattttggttttaaattgtgtCTCTCACCGTTGAAGTGTagctacaataaaaataaaaattacagatATGTGCATTTTAGTAGGTGTAAAAATCAGGAGTAACAAATACTAATAACAGAGCCGACAGTTTTATTACACTGATGaagtataaatatacattatattctggacaaaagtctctctctttctgtctctctctctctctctatgaaaaaattatgaaaacaaaatgttaaCTATGTATAACTATTTGCATAATTTTGCCAAGTTCTTGTAATTTCAATCAAAACAATGGAATCTAACAACATCACTGCTGTCTAGTAGTACCTGTCTgttgacaccaatctttacatgtaaacaaataattaaaaatcgaAAATTGCCATACaatctaatatattaatatttttttacactactGTGGTTTATATGCTACAAATGCACTTTAGCATGTTATTGTGTGTTAATGTAATGTCTCTTACTGTTACAACAGTTTAATGTTCTTAttatttgtgtgcattacaggttTATGCACTTTTCTAATTGTAAACATTGGGATGTTGATTCGATTTTTGAAAAGTTCCTCTGTTTCTCTATACATCAGTGTAAAATACTGCATAAAGCTAAATAGTCtgatcctttttttatttgtttaacgcTGTGTTTACCTGTACTGGTTACTGTTTCCATATGAGTCGCTTGCATGGAGA

Function

symbol description
efr3b Involved in phosphatidylinositol phosphate biosynthetic process and protein localization to plasma membrane. Located in actin cytoskeleton; cytosol; and plasma membrane.

NR:

description
PREDICTED: protein EFR3 homolog B isoform X1

GO: NA

KEGG:

id description
K21842 EFR3; protein EFR3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022672824.1 True 4899 mRNA 0.45 24 16687918 16713041

Neighbor

gene id symbol gene type direction distance location
ect2l NA coding upstream 79461 16594547 ~ 16608457 (+)
ccdc28a ccdc28a coding upstream 94345 16586187 ~ 16593573 (+)
tmem121 tmem121a,tmem121,LOC107594772,LOC107674105,LOC107592808,LOC107697696 coding upstream 148458 16518216 ~ 16539460 (+)
tedc1 NA coding upstream 201520 16471855 ~ 16486398 (+)
dnal1 dnal1 coding upstream 220160 16463901 ~ 16467758 (+)
LOC103022442 LOC108433935,LOC100537549,LOC107592775,LOC107752809,LOC105908160 coding downstream 8184 16721225 ~ 16729066 (+)
LOC103031040 fam150b,LOC108425626 coding downstream 47782 16760823 ~ 16767006 (+)
sh3yl1 sh3yl1,LOC107733179,LOC107594817,LOC107674108 coding downstream 69496 16782537 ~ 16838704 (+)
LOC103043735 id2,id2a,LOC107579075,LOC107707685,LOC106566577,LOC107655320 coding downstream 803931 17516972 ~ 17519541 (+)
asap2 asap2,LOC107707693 coding downstream 1041512 17754553 ~ 17876082 (+)
G81124 NA non-coding upstream 5986 16678648 ~ 16681932 (+)
G81074 NA non-coding upstream 25302 16569003 ~ 16662616 (+)
G81106 NA non-coding upstream 66496 16619583 ~ 16621422 (+)
G81105 NA non-coding upstream 69794 16617687 ~ 16618124 (+)
G81103 NA non-coding upstream 71770 16615202 ~ 16616148 (+)
G81190 NA non-coding downstream 3954 16716995 ~ 16719435 (+)
G81197 NA non-coding downstream 16779 16729820 ~ 16730174 (+)
G81220 NA non-coding downstream 127183 16840224 ~ 16845728 (+)
G81224 NA non-coding downstream 151070 16864111 ~ 16864542 (+)
G81243 NA non-coding downstream 266376 16979417 ~ 16982929 (+)
G80857 NA other upstream 1104587 15563987 ~ 15583331 (+)
LOC111193203 NA other upstream 1484131 15174535 ~ 15203787 (+)
LOC111188193 LOC108431664 other upstream 1852839 14806315 ~ 14835079 (+)
LOC111193140 NA other upstream 1884886 14788602 ~ 14803032 (+)
LOC103029370 pygb,LOC107553065,LOC107663289,LOC107671137,LOC107717055,LOC107583638 other upstream 1889314 14730508 ~ 14798604 (+)
cmpk2 cmpk2 other downstream 1314266 18027307 ~ 18037074 (+)
LOC103035760 rtkn2,rtkn2a other downstream 1747082 18460123 ~ 18469635 (+)
LOC103033848 LOC108435752 other downstream 1798581 18511622 ~ 18520947 (+)
G81704 NA other downstream 2217197 18930238 ~ 18930754 (+)
G81761 NA other downstream 2952695 19665736 ~ 19666047 (+)

Expression


Co-expression Network