LOC103040036


Basic Information

Item Value
gene id LOC103040036
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 19800197 ~ 19828205 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022672891.1
AAGGGGGGCACTCTGCAGTTTTGGAGCGAGAGGAAAAAGCACAGGAGCTGGTTTGCACAGTCTTGGGTGTGGAAGACTTTGGTTGGCAGATGTTCCTCCAGAAAGCCACTAACAGGATGAAGATAGTCAGCCACGTGGACCCTGAGAGATTAGGCGCGGTTGGGTGGTAAACAGATTAGCCGAGAGGCTCCATCTTTAACCTTCTCACTCCTGTGACACCCATCCTCCAAGCCCACATTCACACGCACTCTCAGCCACAGGTTACAGCCTGTGCCAGAACACTCTACCGCTGCCCTCAGGGACCGAAAGTCTTCACTCCTCTGCTGCTCCTTCGCCCTCTGGTCTCTCAATGGAAACCTGGACTTGGTGTCTGTGGAAGCGTACCTCATCCCCAGTGGACCTCAGATAAGTCACTGAAGACCGCTCCCCCCTTCATCCCCAAATGACTGGCTTTGCATCCAAAAGGAAATAAAGCAGTGCATCATGCCATTGAAAACAGGACTATTCCTCATCCTGTTCTTGTTTACCCTCCAAGCCACCAGAATCAAAGATCTTAGAAGCAACGATATCTCAGGAATCAGAAATGTCAGATACAGGCATTTCCTTGGGGCAACACGACCAGTACGACAGATACCCGCTGCACGAGTCTCAGTCGACCAGAGCAGGCAGCATCGAGAAAAGAGATCAGCGCTGTTCAGCACAGGGGTGAAAGTGTGTCCTCAGGAGAGCATGGCAGAGGTCATCTCCAGTCACAAAGCCTACTACAAACTGAGAGTCTGCCAAGAAGCAGTATGGGAAGCTTTCCAGATTTTTCTGGACAGAGTACCAGACACTGTGGAATACCAACAGTGGGTATATGCCTGCCAGAGGGACTCTCTATGTGTGGACGACTTGGCCCGAAACTTCAGCAGCACCCAAGAACACCTTGATATGGTGGCTAAGCAAGTGAGTTCTCAGGAGGAACTGGAGAGTGCCCTTGCCACACCATCGGCACCAGGCGAGAAATGTTCCAAGACTCCTGGAGAGCTACTTGTTATGGGATTAGATCTGACTGGAACTGCAGCCCCTGTCCCTGCAGAGCTGGTGGAGCACATAATAGAGTTTAGCGTGACCGTGGTGGACCCAGGTTACAGCGACTTACTGAGAGACCCTGACAGCTTACAGTATCAGGACGTCAGCCTTAACCTTCACGAGCAGATGCTGCAAATTTTCAGCAAACTTCCTGGGTTTAAGGAGATTCGGCTGCTGGGATTCCAATCTGGAGGTGGTACAGTGCGCTACGCTGTGGTGTTTGAATTAGAAGAGGACACTACAGAAGCAGCCCTAAAGGATATGGTGGCAAAGGCCCTGAGTGAGGATAAGGCCCTGCCTTTGGACCTTCATTCCCTCAGTTTTGAACCAGAGAGACCACAAGACCACATAAGGTATTTACCTGGGGGCATCATTACACAACCTACAGTGGCCATCTCAGAAGAAAGTTCTGTGGCCACTAGCATCTCCATGAGCGATGCAGCTTCTAATGGAACACCAGGGAAGAGGGATGAGGAGGCAGCGGAGGGCACTACACAGGAAATATTCAAAGGTTTGCCTCCAGAGACTACATTAGCAGGCACAACCGAGCGACCCCCTCCCGACACAACGGGACACTCgcagctggaggaggaaaaGCTGATCACAGAGAACACTCAAATAGCTGAAGGACCTAAGAAGAACACTACTTTGGATTACCCTTCAAAACCATCTGAATCTCAAAACGATCTTGTAAATGAAATTTTCTTCACAGCTGCAACACCAAACTTAAATTCCTTTGAAGCTGTAACTACTTCAGTTCAGGTCGGTTCATCAGCTATGCCGTCCACAGAGGTCCCTTCAGAAGTAGCTATAAGAGGTGATGTTATTGGACCATCCTTGGAACCTCCTGAATCCAATAGCCCACTAGACAGCCCTGATGTAGTTAGTGTAAGTGAACCTAGTGAGACAGAGTTCCCATTACCACCTAGCACTACAGAGAACACACAGCCAATAGAGACTCCACCAGTACTTGCCACACCTAATCCAGTTCCTCCTGTAGACATACCCTCTGTCTCCTCGGTATTACCAGTAATTCCTGAGAGCGATCAACCAGAGAGGATACCAGATAGTGACATAAACATGCAGGAGGACGTAGAGCAGACAGAGGAGGAAACAGACACCAGTGACAATCAAGACTACGGTGGAGGATTCGAGGCAGATGAGCACCCACAGTCCTCAGCTCCTGATATCGCTGCCAGTCATGCCAGAGACCTGGTAGTGTTTTTTAGTTTGCGAGTGACCAACATGGTCTTTTCAGAGGATCTTTTCAACAAGAGCTCTCCAGAATACAAATCACTGGAGAACACTTTTCTCGAACTGAGGCAAATCCCAGAACCTGAAAACTTGCCAAAGCCAGAGGTATCCAATAAACAGACTGAGAGGGAACAGAGGACATTAGCCTCAATACCGCTTCTTCCATACCTGCAGTCCAACCTGACTGGCTTTAAGGAGCTGCAGATTCTCAACTTCAGAAACGGCAGTGTGGTGGTAAACAGCAAGATGAAGTTGGCCAAACCAGTCCCGTATAACGTAACAGAAGCTGTGCACTGTGTTCTTGAAGACTTCTGTAATGCTGCGTCAAAAAGACTAGACATAGAAATTGACCCTGAGTCGGTGGATGTGGCAGCAGGTAAGCAGATCTTTGCATTAATAAAATCGGAtaTGAATGATGGTGATCCGTGCAAGTATTTGGACTGTAATGAATTCTCCCGCTGTGTCGTAAACACACTGACTGCAGAAGCTGAGTGTTTGTGTGATCCTGGCTACAGCACGGAGAACGGCCAGCCCTGTGAAAGCATCTGTAACCTCCAGCCTGACTACTGCCTAAATGGGGGGACCTGTGAAATCCTAGCAGGCCATGGAGCCACTTGCAGATGTCCTTTAGGAAAATTCTGGCACTATCATGGAGAGCGCTGCAATGAACTGGTTTCTGTACCTGTTGACCCGCTGCTTTTCGTAGCCTGCCTGATTGGAAGTCTCACTGTGGTTTGTGCTGTGATAGGCATCTTGGTTTTTATTAACAAGAAGTGCATACGGACGAGAAAGACCGTGTCACTAGTGCATTCACACTCCTCCCTCCCCTTTGAGGGTACTATGAGAGTGAATTCTGCTTTTGAGAATGACGAGGGTATCTTGACTCATGTGTCGAGCATCTGCTATCCTATAGGCTCTGACTCCGGGTCCTCTATGCTCTCAGAACACGGCACATTTAAGTCACATTTGAGTTTTGAGATCCCCAGACAACTCTACACAAGAAGATCAGAAAGGCTAGTGCCGGAAATGGTTGATTTCCACCACTGTATACCACACCATGATACATGGCGGCTGTCTAATGAACACAGGACCTCGTGCTGTTTTCTAAGGGGACCAGACAGTGACAGCTTTGAAGTGACCATATTATAATAGTGATTTGATGGCCATTTCTGAGCTCAGCTCGGCACCAAAGGTCTTCAGTGGTCTTCTACACGAACTATATTCAACTCTGTTGGCTTTTTATAGACACTTGGAATGCACATAAAGCTGATGGTGAAGGTAAGCATTGAAGCTCTCACCAATCAACCATGGAGCAAATGGAAACACTCCATTGAGTAAAAGCAAAAGACTGGTTTGGAAGCACGGTCAGACACTTAGAACTGGTtggatattgtttttttccttgtcaaaggtgattttttttgttctttcctCACAATgaggtatttatttacaaatggaTACATTTGGTGGTATCATAGAGAACATAGATTATATGACTGCTCGAACAGTACTCAAACCTCTCTTCAGTAttccaaaaaaagaaactgaatgtaaaataagctgttcatttttatgcttgttatttaataataataataataataataaaaaaactattcagACAGGAATTAGGCCTAATATTCTTATAAAGATATTAGGATAACTAACAACCTTGAAATAACCTAAAACTATTTTGCATGGAAATGCATGTTTCTCTGCAGTCGCTCGTGTTTTGAAAGCCAGACCAAAACACACAGGGAGGCAAggattgatttctttttttattcacttttacaatgaacagaacaaaataaaaaaagaaaacaaaagctta

Function

GO:

id name namespace
GO:0034587 piRNA metabolic process biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022672891.1 True 4162 mRNA 0.46 18 19800197 19828205

Neighbor

gene id symbol gene type direction distance location
LOC103039716 LOC108425599 coding upstream 32889 19765336 ~ 19767308 (+)
LOC103028664 peli2,LOC103028664,LOC108435764,LOC107664501,LOC107586838,LOC107561697,LOC107668538,LOC107733323,LOC107732184,LOC108270353 coding upstream 970240 18810473 ~ 18829957 (+)
ktn1 ktn1 coding upstream 999979 18765653 ~ 18800218 (+)
msh4 msh4 coding upstream 1035617 18750693 ~ 18764580 (+)
atg2b atg2b,LOC107738272,LOC107664023 coding upstream 1051068 18716538 ~ 18749129 (+)
LOC103037509 LOC108425602 coding downstream 322213 20150418 ~ 20154682 (+)
LOC103035446 hadhab,LOC103035446,LOC108425650,LOC100304971,LOC107594700,LOC107752738,LOC107679805,LOC107600864,LOC107741851 coding downstream 333063 20161268 ~ 20174309 (+)
tmem62 tmem62,LOC103132791 coding downstream 356705 20184910 ~ 20199839 (+)
elmsan1 elmsan1 coding downstream 384904 20213109 ~ 20246310 (+)
mta1 mta1,LOC107679789,LOC107666257 coding downstream 563165 20391370 ~ 20446806 (+)
LOC111193210 NA non-coding upstream 55769 19722199 ~ 19744428 (+)
G81769 NA non-coding upstream 123308 19676563 ~ 19676889 (+)
G81745 NA non-coding upstream 253589 19543382 ~ 19546608 (+)
G81742 NA non-coding upstream 268610 19529427 ~ 19531587 (+)
G81725 NA non-coding upstream 475629 19300358 ~ 19324568 (+)
G81822 NA non-coding downstream 72958 19901163 ~ 19908098 (+)
G81827 NA non-coding downstream 92864 19921069 ~ 19924676 (+)
G81830 dpysl5,LOC103380375 non-coding downstream 116930 19945135 ~ 19948417 (+)
G81856 NA non-coding downstream 162334 19990539 ~ 19991729 (+)
G81899 NA non-coding downstream 321572 20149777 ~ 20179530 (+)
G81763 NA other upstream 126559 19673127 ~ 19673638 (+)
G81761 NA other upstream 134150 19665736 ~ 19666047 (+)
G81704 NA other upstream 869443 18930238 ~ 18930754 (+)
LOC103033848 LOC108435752 other upstream 1279250 18511622 ~ 18520947 (+)
LOC103035760 rtkn2,rtkn2a other upstream 1330562 18460123 ~ 18469635 (+)
ralgapa2 ralgapa2,LOC107687934 other downstream 1692702 21520907 ~ 21673438 (+)
G82488 NA other downstream 2529439 22357644 ~ 22358135 (+)
G82609 baz1a other downstream 3402225 23230430 ~ 23231318 (+)
timm9 timm9,LOC107729247,LOC107693171,LOC107689314 other downstream 4047234 23875439 ~ 23877770 (+)
G82811 psma3,LOC107729246,LOC107725600 other downstream 4081477 23909682 ~ 23973975 (+)

Expression


Co-expression Network