mta1 (mta1,LOC107679789,LOC107666257)


Basic Information

Item Value
gene id mta1
gene name mta1,LOC107679789,LOC107666257
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 20391370 ~ 20446806 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022672917.1
gttattttgCCTCTAGTGGGTCTGAAGTTGTACAACAGCGATTGTTTCGGTATTTCCGAGGGAGGCGGAGACTGAGCTGGACGGTGATGCTCGCGGTCTCCACCTCCTccgcctctcctcctctctcctccctcgAGTCTCTCCTGACCGCCAGCCCGCTTTCTCCCTCCCTCCGGCCGCCCCGCTTTGTTTTCGCGCTCTTACCGAGTCCCTCAGCTGCTCTGTCCCGGCGCGAGTCTCCGAGTAGCGCGGTGAAGCAGAGTAGTGAAAATGGGCGCACTGTCTCTTTAAGATCCCCTGACTGCTCCGCTTCGTATTGATCAATCCACCATTTTCCAACACACTCAGCGGCGGAGGCAGTGCTCGCGACGGCGTGAGGAAGCCCTACCTGGAGCCACCAGGACGCGGGGCAGTCATGGCAGCCAACATGTACCGGGTCGGAGATTATGTTTACTTTGAAAACTCCTCCAGTAACCCACTGCTGATCAGGAGAATAGAGGAACTCAAcaagACGGCAAATGGAAACGTGGAGGCCAAAGTGGTGTGTTTCTACAGACGGAGAGACATCTCTGCCACGCTCATCGCCTTAGCAGACAAACATGCACgagagctggaggaggagatgGAGAACCCAGAGATGGCAGATCTGCCCgagaaacagaaacaccagCTGAGACACAGAGAACTCTTTCTCTCCAGACAGCTGGAGTCTCTGCCTGCTACACACATCAGGGGAAAGTGCTGTGTGACGCTTCTCAACGAGACAGAGACCCTCAAGTCCTACCTGGACAGAGAGGACGCGTTCTTCTACTCGCTGGTGTACGACCCTCAGCAGAAGACTCTCCTGGCCGATAAGGGGGAGATCAGAGTGGGGAATAAGTACCAGGCAGATATTACTGACCTTCTGCAAGAGGGTGAGGATGACGGCAGGGAGCAGGTCAAACTGGAGGAGAGAGTGTGGGACACCAGCAGTCCtctgacagagaaacagatcgACCAGTTCCTTGTAGTGGCTCGGTCTGTGGGTACATTTGCACGGGCTCTGGACTGCAGTAGTTCAGTTCGGCAGCCCAGTCTGCACATGAGCGCTGCAGCAGCCTCCAGAGATATCACACTGTTCCATGCCATGGACACACTGCACAAGAACGGCTATGACATGACCCGGGCTATCGCAGCCCTGGTGCCGCAGGGTGGACCCGTACTCTGCAGAGACGAGATGGAGGAGTGGAGCGCTTCAGAGGCCAACCTGTTCGAAGAGGCACTGGAGAAATACGGCAAAGACTTCACTGACATCCAGCAAGACTTTcTGCCGTGGAAGTCTCTGACTAGCATTATTGAGTATTACTACATGTGGAAAACCACAGACAGATATGTTCAGCAGAAACGGTTAAAGGCTGCGGAGGCGGAGAGCAAGCTGAAGCAGGTTTACATCCCTAACTATAACAAACCCAACCCCAACCAGCTGAGTGTGAACAGTGTGAAGCCAGCTCTGGTGAACGGGGCAGGGGTGTTGCCGGGGGCGACGGGGCAGCCGACCGTACTTGGCCGGGCCTGCGAGAGCTGCTACAccaCCAGCTCGTATCAGTGGTACTCATGGGGGCCGACCAACATGCAGTGCAGGCTGTGCGCCTCCTGCTGGACCTACTGGAAGAAGTACGGTGGCCTGAAGATGCCCACTAGGTTGGACGGGGAGCGGCCAGGTCCCAACCGCAACAACATGAGTCCTCATGGCCTGCCGGTGAGGCACAGCGGGAGTCCAAAGTTCGCTGTGAAGACCAGGCAAGCTTTCTACCTGCAGACCACCCAGCTGACCCGAATGGCCCGCCGGGTCTGCCAGGACCTCCTCAGGTCCCGCTACGTAGCTAGACACCCCTACATACCTGTCAACACAGCAGCCATCAAAGCAGAGTGCGCAGTGCGGTTGCCAGATATGTCCAAAAAGCCTGCATCCTTGAAACAGGCAGTACGGAAGCCTCTGGAGTCTGTGGTTAGATATCTTGAGGCCCATCCATGTCCTCCTAAACCAGAAATTCTTCGAGGAGCCTCCATTTCCACAAGCAGCCTGACGCCCATCAAATCCTCCCCCATCCTCAACAACGGCTCGCCCACCATCCTGGGCAAACGTACCTACGAGCAGCACAACGGCCTGGAGGGATCCAAACCCAAAGTGTTGACCCCTCAGTGGGAGATCATGTCCAAGCGTATGTCTGAGCAGGGACGCCCTCCCTCCGCCTTGCAGGACAATGAAGTTCATGAGCTTGACTGACCCCTTCTGTGGCCTCCACCTGTTATGCACAGAGAACAGgtgaAGATGAAggttttctctccatctctcagtGATTTGAAGGACCTATGAAGAGGATCTAGGCTCAGCCTGGGCGGTATTAGAGCTGGTGTCAATAAGAGACTTTGGAGGGATGGGGACAGGGGGGGACAGCAAAGAACTTTTGAACTAGAACAGGCTTTGGCCAATGATAGGACTGACCTGACTGTACAGGACTGCGTTCAATATTTACCATATATTGCAACTTctgttgattattattattattattattattattattattattataactacaAGTCTTgttgctattgttttttttttttgttttgttcattttttaaccAAATGTAATCTTTTTTTAGTTAACTGTTGATAAAAGAGAGAAACTGAGACGTTTCTTGAAGCAGCTTGCTCTCAAACCCTAAAGAGGGAAAACATGGACAGACTGTCACTTTGGCATCTTGCATTGTTTTCAAATTTTTCTAAACTTACCAGAAAAAGAGATGGACAATTCCGTCAGTGCTGTTGTTTTGATTCCGTTTCTTTGAATGCTTGTATTATTTGGTTTCTTTAGTCCGTCCTTCCCTGAAGCCACAGACGTTTAACTTATTGATGAAGATGACGGAACGTGCTCTTTTTCTACCTTTTTCCACAAGTATTGCAACTAAGCTTCGATGGTGTAATTACAGAAAGTTGTTTCTCTTTTGTGAATATGTAAATGAGAACATTTACGGAGGCATTATTGTACAGTGGTGCATTTTGGGCCTCCAGTGTTTATCAATGCTTGTTATAATGATTTTGTCATGTACAGCATATTCTTTTTGTAAGGAAACTCTTGCATAAATGGAGAATTGTTCTGAGATGGTGGAAATTCTACAAGGGTACTGCTCCATGAATACAATGCACCTTCTCAAGAATGATACCGTATACATGTTTTACAGATCAGTTTCTTTACACTCACACGCATCCTGCCAGGAGTGGTGCTGAAAACCAGGCAGGTTATCAGCCTGCTGATATGCGATATGCTCGGGTTTACACCACAGTTggcttattaaatattaatacctTTTAGAGAGCGGATGGCAAATAGAAGTCCTCCCGACACGTTCATCACGTTCACTAAAAGCCTCATGTTTTTCATCAGATTATCGTAGTTGAGCCTTATTTTAGTCATTACATAGATAACAATATGACAACATGCCTCCTGTGTTCCAAATTTAAAGGTCAGATTGGAAAGACTGTGACCAGCCAGACAGTGGTGTGTAGGGAAAGGGTCAAATCAAGTCAAGTAGGAAGTGCCagttctccttaaaaaaaaaaaaaaaaggggg

Function

symbol description
mta1 Predicted to enable histone deacetylase binding activity; transcription coactivator activity; and transcription corepressor activity. Predicted to be involved in several processes, including histone deacetylation; negative regulation of transcription by RNA polymerase II; and response to ionizing radiation. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be located in nucleus. Predicted to be part of NuRD complex. Predicted to be active in nucleoplasm. Orthologous to human MTA1 (metastasis associated 1).

NR:

description
metastasis-associated protein MTA1-like

GO: NA

KEGG:

id description
K11660 MTA; metastasis-associated protein MTA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022672917.1 True 3618 mRNA 0.50 18 20391370 20446806

Neighbor

gene id symbol gene type direction distance location
elmsan1 elmsan1 coding upstream 145060 20213109 ~ 20246310 (+)
tmem62 tmem62,LOC103132791 coding upstream 191531 20184910 ~ 20199839 (+)
LOC103035446 hadhab,LOC103035446,LOC108425650,LOC100304971,LOC107594700,LOC107752738,LOC107679805,LOC107600864,LOC107741851 coding upstream 217061 20161268 ~ 20174309 (+)
LOC103037509 LOC108425602 coding upstream 236688 20150418 ~ 20154682 (+)
LOC103040036 NA coding upstream 563165 19800197 ~ 19828205 (+)
tmem229b tmem229b,LOC107752730,LOC107578043,LOC107708331,LOC107679790,LOC107666241 coding downstream 1104 20447910 ~ 20464852 (+)
LOC103044638 LOC108425659,LOC108270359,LOC107679799,LOC107752725,LOC107666266 coding downstream 267617 20714423 ~ 20771645 (+)
slc25a21 slc25a21,LOC107679800 coding downstream 330632 20777438 ~ 20888798 (+)
LOC103021743 nkx2-8,LOC108421114 coding downstream 468460 20915266 ~ 20917239 (+)
LOC103043023 nkx2-1,nkx2.1,LOC107578306,LOC107582966,LOC107679765,LOC107666245 coding downstream 474731 20921537 ~ 20925668 (+)
G81955 NA non-coding upstream 18978 20372114 ~ 20372392 (+)
G81920 NA non-coding upstream 89638 20301278 ~ 20301732 (+)
G81919 crip1,LOC103034058,LOC106611282,LOC107600860 non-coding upstream 118647 20261599 ~ 20272723 (+)
G81917 NA non-coding upstream 167702 20222482 ~ 20223668 (+)
G81913 NA non-coding upstream 204217 20185814 ~ 20187153 (+)
G81983 NA non-coding downstream 96905 20543711 ~ 20543911 (+)
G82014 NA non-coding downstream 325950 20772756 ~ 20776477 (+)
G82073 NA non-coding downstream 500790 20947596 ~ 20948442 (+)
G82089 NA non-coding downstream 572286 21019092 ~ 21019862 (+)
G82088 NA non-coding downstream 575264 21022070 ~ 21022572 (+)
G81763 NA other upstream 717732 19673127 ~ 19673638 (+)
G81761 NA other upstream 725323 19665736 ~ 19666047 (+)
G81704 NA other upstream 1460616 18930238 ~ 18930754 (+)
LOC103033848 LOC108435752 other upstream 1870423 18511622 ~ 18520947 (+)
LOC103035760 rtkn2,rtkn2a other upstream 1921735 18460123 ~ 18469635 (+)
ralgapa2 ralgapa2,LOC107687934 other downstream 1074101 21520907 ~ 21673438 (+)
G82488 NA other downstream 1910838 22357644 ~ 22358135 (+)
G82609 baz1a other downstream 2783624 23230430 ~ 23231318 (+)
timm9 timm9,LOC107729247,LOC107693171,LOC107689314 other downstream 3428633 23875439 ~ 23877770 (+)
G82811 psma3,LOC107729246,LOC107725600 other downstream 3462876 23909682 ~ 23973975 (+)

Expression


Co-expression Network