LOC103044638 (LOC108425659,LOC108270359,LOC107679799,LOC107752725,LOC107666266)


Basic Information

Item Value
gene id LOC103044638
gene name LOC108425659,LOC108270359,LOC107679799,LOC107752725,LOC107666266
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 20714423 ~ 20771645 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022672923.1
CTTTAAAGGAATGAAGGATGAAGTTGGTGAATGGAGAGTCGAGGGCTGTGTAGAGAAGATTAAAACAGCGCGAGCGGGAATGAGCGGGTTAGAGCAACCGGTCCGGGTcggacagtgagagagagagagagagagagaggagagagagagagagaagagagagagagagtgtgtgtgtgtgtgtgtgtgtgtgtaagctctCAGCACTTGGAGCAGCGTTGTGAAGATGTGCCGGCTGGAAACGCGGAGTGAGAAAGTGTAAAGGACAGCGGTAAGTGGTTGGTGCAGTGGTGTGCGGGCACAGATGGCTGAGGTGATGGAGGGAGGTGCAGCGGGTGCAGTGGTAGCTGTGTCTGGTGCCAGTGTAGACTGGCAGAAGAGATGTGTGTCCCTCGAGATGCAGCTTCTCCGCTTCCGGCTGCAAGCGGGCAAAATCCGACAGCTACTGGCTGAGAAGATGCAAGAACTTGAGCAAAGAGTGACCGAGTCTGACCAGAGAGCTGAGAATGCTGAGAAACAGGTACACATAATGGAAGAGAAGCTTAAGTCAGCAAATGTGCTGCCCAGCGAATCAGAAAGCTCCTTATACAGACGATATCAAGAGCTGACCAGTCAGATGCAGGAGAAAGATGTGATGATAAAGAGACTTGAAGCACAGCTGGAAAAACAGaGTTTGGTTCGGGCCCAAGAAGCCAAGATTATAGAGGAGAAGGCAGCCAAAATCAAAGACTGGGTTACATTCAAGTTAAGAgagATGGAAGTGGAGAACCAACAGCTGAAGATGGTCAATATGAAGCAGGCGGAGCAAATTATCCAGCAGCAGGACAAGCTTCAAACTCTGTTGGAGAGACCCACATCCCCTGTTTCTCCCAGGTCTCCATTGCTGGACGCTCACATGGTTCCCTCCAGCCCCCTGCATCCCCCCAGCTGCCCTGGAACTCCCCCTATGCAGGACGAGGGCTGGAAAATGACAGGCCCACGCATGCCTGTGTCCAACTTTACAGCAGATGGTAAGAGGAAAGCAACAGAAAGTTCGGACTCTTCTTTCCAGAGTGCATCCAAACATCTGCCTCACCATGAAAGAAGGGACAGCTCTCTGAAGCCTGGCTTGGACAGAGGCGACACAACCAGCATTACTGCAGCCACAGACGTGCTGGAGACACCCGTGGCCATCCCTCGGGATAAAGGGGTGGGAGGGGGCTCGGACAGAGACCACTCCTCCGATGAACTCAACAGCAAATTCCGCTCCCAGCGCCTTCgctcttcttcctcctcatcttcctcatcctcctccaccTATGAGACCCCTGGCACTGGTGGCTTTGACACACCCACCCCTGCTCCAAAAAGTCctctccctctgtgtgtgtcttcttCAGCGGGCCGTGGCCCTCTGTCCGGCACCAGTATGACTCTGCCCAAGGTACGCACCCCGCTGACTCCCAGAGACAGCATCCAGCTGGTGAAGAAGCACCACAGTCAGCCTCAGCCAGGGCTGGAGCGCCTCCATCAGGTCAACGTCAGCATAGATATCGGTTCCAGCGCGGTTCTGTTCCGCCGCAGCCAGGCACCGGCCTCTGTATCGACGCTGGGGGTGGAGGAGACTGACATTGATGAAGGACCTTCGGAGAATAtgatggaggtggtggaggaagGGTCCACTGCAGGAGCGGTACTTCATGATGGAGTCTCGTTTGTGGGCTTGGCAGAGGAGCTGGAGATGCTGGATCCAGAGGCTTTGaaaccaccaacaccacctcTGCACCGCTTTCCCTCATGGGAGAGCCGTATCTATGCAGTGGCGAAGTCTGGCATGAGGGTGTCAGAGGCCAGTCCTGGAGCCAGGAACACCGGAAGAGTGTCCATCCTGCCTCAGTACCCTGCAGCCGGTCCTTTTACTCATCTCATCTACAAGAACATCAGTGTTCCAGTCTACTCCACACTTAAAGGGAAAGCTACTCAGATCAGCAGTGTTCCTCTTCCTGATGATGACTCGGGCTCAGAGGATGATAGCAGCTCACTGGTCAGTCTTCGCACCTCAGCTGTGGGTCTGGAGAGGAAGGGCAGCACCCCCGGAAGCCCTCGTGCTGTAAAGAGAGGAGTGTCCATGTCCTCTATCAGTTCAGAGAGTGATTATGCCATCCCTCCAGATGCCTACTCACTGGACAGTGACTACTCTGAGCCTGAGCAGAAAGTGCAGCGTACTTCATCGTACTCCTGCGAGAGCGTGGGGCCTGAGACTCTGGAGAAGTCAGGCTACCTGCTGAAGATGGGCAGCCAGGTGAAGGCATGGAAGCGACGCTGGTTCATCCTGAGGAATGGAGAGATCCTGTATTATAAATCTCCAagTGACGTGATCCGGAAGCCTCAGGGCCATATTGAGCTGAACTCTTCCTGTCGTATAGCCCGTGGAGAGGGGGCTCAGACATTCCAGttaatcACAGAGAAGAAGACGTTCTACCTGACTGCAGACTCCCCCAACATCCTGGAGGAGTGGATCCGAGTTCTCCAGAACATTCTTAAAGTCCAGGCCAGCGGACCAATCTTGGTGGAGATTCAAGCCAAGCCCACAGTACGCGGCTGGCTGACTAAGGTCAGACATGGTCATTCCAAGCTTGTGTGGTGCACTTTAACTGGGAAGGTTTTCTACTACTACCGCAACCAGGATGACAAGTTCCCTCTAGGTCAGATCCGTGTGCGAGAGGCACGAGTGGAGGAGGTGGACAGGTCATGTGACTCCGATGAAGACTATGAGgcaggtgggcggggcttccTCTCTTCTCACTGTACACTGGTGGTTCATCCCAAGGAGCAAAGCCCCACCTACCTGCTTATTGGCACCAAGCAAGAAAAGGACACCTGGCTGTACCATCTGACTGTGGCAGCAGGAAGTTGTCCCAGCCTGAAAGTGGGCACAGAGTATGAGCAGCTGATTGGCAAGCTGCTGGATGTAGACGGAGACTCAGACTCTCCACTGTGGAAACATGAGGTTCTGTGCTACAGTAGGGACGGACTGCAATCCCCACTGACCACTCTGCCCTCAGAAGCCCTTCAAACAGAGGCACTCAAACTCTTTAAGTCATTTCAGCTGTTCATAAATGTGCTGGTGGAGGCGCCTTCCATAGACTACCACACGTCTCTGGCCCAGAGTGCATTGCAGGTGTGTCTGACCCACCCCGAGCTGCAGAATGAGATGTACTGTCAGCTGATCAAGCAGACCAACTGTCGCACGCCCAACAACTACTCTCTCACACAGTGCTGGCAGCTGTTGTCCGTATGTGTGGCCCTCTTCCTGCCCCAGCATCGCTTCCTGTGGTACCTGAGACAGTACCTGCAGAGAAACGCTGATCCCAAgagtGAGGTAGGGAAGTATGCAGTGTACTGTCAGCGGTCAGTGGAGAGAGCTCTGcagaatggagagagagaggccaagCCGTCTCGTATGGAGATCATGTCTATTCTGCTGAGGAACCCTTATCATCACTCGCTGCCCTTCAGCATACCCGTTCATTTTATGAACAACACCTACCAGGTAGTGGGGTTTGATGGTTCCACCACAGTGGAGGAGTTCGTCAACACGCTGAATCAGAGAGCGGGCATGAGGAAGCCTCAGCTCTCCGGCTTCGCGCTCTTTACTGACGACCCTTCAGGAAAAGACCTGGAGCACTGCCTGCAGCCTGCTGCCAAGatctGTGATGTGATCTCAAAGTGGGAACAGGCCTTGAAAGAACTGCAGCCTGGGAAATATGAGGGAACACGCATTGTTCGCTTAACATACAAAAGCAGGCTGTGGTTCCGAGCACAGGCGAAAGGAGAAACGGAGAGAGAGCGCCTGCTGCTGGCGTATCAAGTGAATGAAGAGGTGCACCAAGGCCACTTTcctgttaataaagagctgGCACTGGAAGTGGCTGCTCTGATGGCCCAGGTGGAACATGGCGACTTGGACCGAGCTCCTGCATCTCCCAGCGCTTCTCCTGCATCTCCACAGTCTAAAACCCAGCAGATACTGCTGCAGGTTCTGGAACGCTTCTATCCAAAACGCTACAAACAGGACTACAGTGTGGAACAGCTGAGGGAGCTGGCTGAGCGTCTGGCTGCTAAGTGGTCTGTTCTGCGGGGGTGCACTGCTTCAGAATGTGTGAGGATCTATTTGACTGTGGCTCGCAAATGGCCCCTGTTTGGAGCCAAGCTATTCAGCGCCAAAccGCTGCCTCCCTCCACGCTACAGCAGACGCAGGTGTGGCTTGCTGTGAGCGAGGACGGGCTAAATGTGTTAGATTATTCCATGCACCTGTTGGTCACATACCCCTACCAGTCAGTGATCACCTTTGGAGGGTGCAAAGAAGACTTCATGGTGGTGGTCAGTCAGACTAAAGACCAGGCTTTGGGGAAGAGGACCGTGGACAAGCTTGGATTTGCGATGGCTAAACCAAAGATCTTGGAACTGACTCTGCTGATGGCCAGCTACATCAACTACTGGACGGCAGGCATTCCAGCTGCCGGAGGTCAGATGCAGCCCTCCCGAGGAGACAGGAAGCTGTGGGACATCGATAGCAGACATTTCCCCTCAATGACATACACAACCAAAGGCCCCACACTTCTTTGAGGGATCAGCAGTGCCCGATAACAGACACTCTAAACTTGTACACAGGGTACAGAGAGAGCTAAAGCCAAGCCTTGCGCAAACACCCTCTGGTGGTCATGGTGGTCTATATGCAGGATTTGCATTGGCACAGACCCTTTGACTTCTGAGTGGGAAGTTGGATGAAAAGGCAACACATGAATTATTTTTCATCATTCATCAcataaaaaagatcaaataCTTGCCAATGAAGGACAAGCAGTCCTTTTATTTATAAGCTACACATTCTTTGGACCGTTACTGTGAGCTGCTCTGCGAGTGGGATTTCAGGGTCATGCAGCCACTCTACTTCTCGCTTCTTTGCTCAGTTAAGATGGAAAAGAGGCTTTGCCAGTGCTTGAAAATGGAGAATGTGGAAGACTAAGAAAAGGTactttgcttaaaatattgacTGAAGCACAAAGGAAGAAGGCCTTACCTTGAAAGTATGTAAACGAATGCCTTCAATCCAGGCTCTAGTTGGATTTCTGTGGCTTTTTTTAAGTCCTGCCATGACTTctgttttgttacttttttcttagtctatgttttattttctattatttttatgttgcaGAGTCTGTCTCAAAGTTTGTTGAAACTTTTGTTTAGTTATAGTGTAGAAATTTCAGGTACAATATTTATGTGCCGCTTAATTAGGTCTGTCATGCTAACAATTTATTTTGGATGATTTATTGTCCCAGAATGTTTTGCTGTAAACTATCATTTTCATTTGAAGACCATTTTTGCcactgataaaataataaaacaaaagcagTAGAATGCAAGTATGCCctttaaaacagcattaaaaacaaatataattttaaacattttaatttcaatATCCCAAATAATTAAAACCTGCTTTTAAACAAAGTTCACATATTGACTTACTGATATTAATGGGCTCTCTTTGATAAGTAAACACAATGGGGATTATTATggtcagcaaaaaatattgtggTAATGTAAATCGATCACGtaaatattgtgacaggcctacactTAATAAGAAAACTCAGCATTTAATTCCTGACTATGCTGAGAGTATTGGTgctacagatgtttttttggagTGATGCCATAGAGGAACCATTTGTGTGAAAGAGTGTAAATGTAAAGGACATTTACATCCACTGCTTTAAACTTTctctacacatatatatata

Function

NR:

description
PREDICTED: pleckstrin homology domain-containing family H member 1-like isoform X3

GO:

id name namespace
GO:0001569 branching involved in blood vessel morphogenesis biological_process
GO:0007411 axon guidance biological_process
GO:0005856 cytoskeleton cellular_component

KEGG:

id description
K24020 PLEKHH; pleckstrin homology domain-containing family H

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022672923.1 True 5796 mRNA 0.50 30 20714423 20771645

Neighbor

gene id symbol gene type direction distance location
tmem229b tmem229b,LOC107752730,LOC107578043,LOC107708331,LOC107679790,LOC107666241 coding upstream 249571 20447910 ~ 20464852 (+)
mta1 mta1,LOC107679789,LOC107666257 coding upstream 267617 20391370 ~ 20446806 (+)
elmsan1 elmsan1 coding upstream 468113 20213109 ~ 20246310 (+)
tmem62 tmem62,LOC103132791 coding upstream 514584 20184910 ~ 20199839 (+)
LOC103035446 hadhab,LOC103035446,LOC108425650,LOC100304971,LOC107594700,LOC107752738,LOC107679805,LOC107600864,LOC107741851 coding upstream 540114 20161268 ~ 20174309 (+)
slc25a21 slc25a21,LOC107679800 coding downstream 5793 20777438 ~ 20888798 (+)
LOC103021743 nkx2-8,LOC108421114 coding downstream 143621 20915266 ~ 20917239 (+)
LOC103043023 nkx2-1,nkx2.1,LOC107578306,LOC107582966,LOC107679765,LOC107666245 coding downstream 149892 20921537 ~ 20925668 (+)
mbip NA coding downstream 170063 20941708 ~ 20959391 (+)
cdan1 cdan1,LOC107582945 coding downstream 289050 21060695 ~ 21079622 (+)
G81983 NA non-coding upstream 170512 20543711 ~ 20543911 (+)
G81955 NA non-coding upstream 342031 20372114 ~ 20372392 (+)
G81920 NA non-coding upstream 412691 20301278 ~ 20301732 (+)
G81919 crip1,LOC103034058,LOC106611282,LOC107600860 non-coding upstream 441700 20261599 ~ 20272723 (+)
G81917 NA non-coding upstream 490755 20222482 ~ 20223668 (+)
G82014 NA non-coding downstream 1111 20772756 ~ 20776477 (+)
G82073 NA non-coding downstream 175951 20947596 ~ 20948442 (+)
G82089 NA non-coding downstream 247447 21019092 ~ 21019862 (+)
G82088 NA non-coding downstream 250425 21022070 ~ 21022572 (+)
G82090 NA non-coding downstream 251359 21023004 ~ 21023858 (+)
G81763 NA other upstream 1040785 19673127 ~ 19673638 (+)
G81761 NA other upstream 1048376 19665736 ~ 19666047 (+)
G81704 NA other upstream 1783669 18930238 ~ 18930754 (+)
LOC103033848 LOC108435752 other upstream 2193476 18511622 ~ 18520947 (+)
LOC103035760 rtkn2,rtkn2a other upstream 2244788 18460123 ~ 18469635 (+)
ralgapa2 ralgapa2,LOC107687934 other downstream 749262 21520907 ~ 21673438 (+)
G82488 NA other downstream 1585999 22357644 ~ 22358135 (+)
G82609 baz1a other downstream 2458785 23230430 ~ 23231318 (+)
timm9 timm9,LOC107729247,LOC107693171,LOC107689314 other downstream 3103794 23875439 ~ 23877770 (+)
G82811 psma3,LOC107729246,LOC107725600 other downstream 3138037 23909682 ~ 23973975 (+)

Expression


Co-expression Network