tmem87a (tmem87a)


Basic Information

Item Value
gene id tmem87a
gene name tmem87a
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 21914226 ~ 21926373 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022672936.1
cctgTGTTGTGTCGTGCTGGTGGGTGGCACTTGCcggctgtgtttgtgtgaaaatgACATATGCTcgtgtgtttctgtctgttttattcTTATGGAGGTCATGCTGCGCGCTCGGGGCGGAGGTTTCCCTGTGGAATGTAGATGTTTCCACGCAAAAAGAAATTGTGCTTCGCAAGACCTTGTATGCCAACACCACAATCTTCATTAAATTTCAGGGACATGTGGCGGCATGTGAAGAGAAGAAAATGGCCTTTAATGTGAGCTGGTACCTGCGTTCCTCCATCTGCTATAATGAAGTCTTCAACACCCCAGATAATACAGCTTTGACCATGTTTGGAATGGATCAGAGAGCAAGGGATGACTGGCCTGGCTTCTACAGCCAGGGCTACATCTATTTTGAAAACTGCTCATCTCTGTTCACACCAAAGgtttaTTATAAAGAGTTTCAGCCAATTCTTCCTCTCGTCAGTTCAACATCTCAAGAGGACAAAGCCACAAACCAAACAGGAAATGTGTGGGATAGCAAACCGGATGTTGGAGCAGTTGCTCAGTCATGGTCGAACAGCCCCTACATGTTTATTCTGAAATTTCAACAAGAACCGCAACCTGATGCCAGTAGAGGGCGTAGAGAGGCAGAGGACAAGAACTTATCCAGTGATTTAGACAACCATTTATCAATTACAAtGACTGTAGAAATGAAGCGTCATAATGACTATTCCTCACCTGCTGATTGGCCTCTAATGACTTTCTTCATGGTCATGTGCATCGTGTATGTGCTGTTTGGTGCTCTGTGGCTCCTCTGGCTGATCTGTTATTGGAGAGACCTCCTCAGGATCCAGTTCTGGATCGGTGCTGTCATCATCCTGGGCATGCTGGAGAAAGCTGTCTTCTACTCTGAGTACCAGAGCATCCGATACCAAGGAGACTATGaccacaatGCTGTTATCTTTGCTGAGCTGCTGTCTGCACTGAAGAGATCCCTGGCTCGAATATTGGTGATCATAGTCAGTCTGGGCTATGGCATTGTCAGACCAAGGCTGGGGACTACAGTGCCCAGGCTGGTGGCGGTAGGCCTGCTGTATCTCATCTTCTCCTCTGTAGAGGGGGTTCTCAGGGTAACAGGGGGTTTCTATGGCACTGTGGCTCTCGTCGCtaatctcagtctctctcttatTGATTCCTGCGTCATGTGGTACATTTTCATCAGTTTGTCTCAGACTACTCGCCTTCTGAAGCTTCGCAGAAATGTGGTGAAGCTCTCCTTATATCAGCACTTTACCAACACCCTCATATTCTCTGTGCTGGCATCTATCATTTTCATCGTATGGACCACCAAGCAGTTCAAGATTGTGGAGTGTCAGAGAGCTTGGAGAGAACTGTGGGTGGATGATGCTTTCTGGAGGTTGCTGTTCTCCACCATCTTGCTGGTGATTATGGTGCTACTGCGGCCCTCTGTCAATAGCCAAAGATTTTCCCATTCGCCCCTTATTGATGAGgaagatgatgaggatgatgaagcGAAGGAACCTATGCTTAATGAAGCATTTGAGGGAATGAAAATGAGAGGAGCAAAGTCAGACACACACGCAAGTCAAAAACTACTCGGCAAAGAGAGCTCCCAAGATGATGACCTGAAATGGGTGGAAGATAACATTCCTACAACTGTAGTCGATGTAGCTTTGCCTGTGGTGTTGGATGACGAAGAGGAAATTCTAAACACCAGGATGGAGAGATCCAAAATGGAGTAGGCTTCATGCAGGTGCATAAAAGCAAGATATTTATTTCTCCAGTGCAGCTGAGAACTTATAAAGTGATGATAAATGTCACTCAGTTGAAACCCTTGGTTGGAGTACTGTGTTTTCATTTGAGACAGTTTCTGGTCTGGGGCAAAGTGTGGAAATATGTCTCAGGCTCAATGTGAAATCTGTCAATCTTCTTTGCCAtttcttattgtttttgttgGGTATTTTGCTGGGATTCTATTTGTGCAACTTTtcttatttaagtatttttgtgCTTTCTTAAAGCATGTGGACAGATTTAATTTTGACTCAATACCATCCAATCCTTTTTAATAACCTAATCAGTACTTATACCTTAATGTCATTACCAGTTCCTAAACAATACTTTTTCCAATATCTTGTTTCAAATTACAAACAGAAAGTGGATGTGGCTTAAAACTGCAAGAATGTACAAACAGATTGTATGTTAGGCAATCTGCAGTTATATTTGGTAACATGTGGACTAATTGGTTCAGTGCTGTTGATTACATTCGTTTCTTAGGTATTCAAGTTTGGCATTGCCAATACTCTCTCAAGTATTGATATTGTTCAGTCCGTGCCATGAAAGTATCTAACTACGATAACCAATCCTAGGTTTGacttttcatcttttttatGCCTGATTAGAAGGCAGATTGCATAACATTTGGCTATGGGTGTCTACAGTTGGGTTCAATTATTTTGGGAAAGAATTTGACACAGCTTGTCTTTTTTGTGTATAAGATCACTtgaaattacacatttattaagcatttaattatatgcatatatttatgttttaaagttAATCATTCTTACATAAAAGATTTGTggaaagatatattttttgtacatcAAATGCTTGTTagcttgtttcttttttaattgcCTTAGCTTTACTGGTGACATGGGAAGGGGGTGTTGTGTTTGTCTCTGTTGAGGTTTggctgaaaaataataaaatttactttgactttttaa

Function

symbol description
tmem87a Involved in retrograde transport, endosome to Golgi. Located in Golgi cisterna membrane.

NR:

description
PREDICTED: transmembrane protein 87A

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022672936.1 True 2741 mRNA 0.42 20 21914226 21926373

Neighbor

gene id symbol gene type direction distance location
gpr68 LOC108425668 coding upstream 617970 21282603 ~ 21296256 (+)
LOC103041063 ccdc88c,LOC107582943 coding upstream 635088 21194708 ~ 21279138 (+)
LOC103047712 sptb,LOC108425666,LOC107582900,LOC107662651,LOC107730205,LOC107602260,LOC108270244 coding upstream 724958 21141773 ~ 21189268 (+)
stard9 LOC108270056,LOC107582944 coding upstream 777319 21081464 ~ 21136907 (+)
cdan1 cdan1,LOC107582945 coding upstream 834604 21060695 ~ 21079622 (+)
vps39 vps39 coding downstream 1193 21927566 ~ 21948191 (+)
galnt16 galnt16,LOC107707671 coding downstream 29635 21956008 ~ 21994947 (+)
numb numb coding downstream 74240 22000613 ~ 22046430 (+)
exd2 exd2 coding downstream 121241 22047614 ~ 22055411 (+)
ubr1 ubr1 coding downstream 155314 22081687 ~ 22103651 (+)
G82336 tmem30a,LOC107581488,LOC107714749,LOC107571817,LOC104951461,LOC107687843,LOC107721815 non-coding upstream 33224 21880537 ~ 21881002 (+)
G82349 LOC108428626,LOC106610771,LOC105015763,LOC107687947 non-coding upstream 35485 21878055 ~ 21878741 (+)
G82345 NA non-coding upstream 44332 21868379 ~ 21869894 (+)
G82311 NA non-coding upstream 125286 21787174 ~ 21788940 (+)
G82270 NA non-coding upstream 192848 21720629 ~ 21721378 (+)
G82383 erh,ERH non-coding downstream 148169 22074542 ~ 22079050 (+)
G82438 NA non-coding downstream 212123 22138496 ~ 22141716 (+)
G82465 NA non-coding downstream 308130 22234503 ~ 22234891 (+)
G82476 NA non-coding downstream 358690 22285063 ~ 22285341 (+)
G82487 NA non-coding downstream 429268 22355641 ~ 22356086 (+)
ralgapa2 ralgapa2,LOC107687934 other upstream 240788 21520907 ~ 21673438 (+)
G81763 NA other upstream 2240588 19673127 ~ 19673638 (+)
G81761 NA other upstream 2248179 19665736 ~ 19666047 (+)
G81704 NA other upstream 2983472 18930238 ~ 18930754 (+)
LOC103033848 LOC108435752 other upstream 3393279 18511622 ~ 18520947 (+)
G82488 NA other downstream 431271 22357644 ~ 22358135 (+)
G82609 baz1a other downstream 1304057 23230430 ~ 23231318 (+)
timm9 timm9,LOC107729247,LOC107693171,LOC107689314 other downstream 1949066 23875439 ~ 23877770 (+)
G82811 psma3,LOC107729246,LOC107725600 other downstream 1983309 23909682 ~ 23973975 (+)
G82853 tulp4,LOC108428686,LOC107589648,LOC107734174,LOC107692724,LOC107742753,LOC107653590 other downstream 2213016 24139389 ~ 24142232 (+)

Expression


Co-expression Network