LOC103045971


Basic Information

Item Value
gene id LOC103045971
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 24742969 ~ 24747805 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022673010.1
TGAAAGGAAAGCATGAGAAGCAGCATATGCCACTTCGCTGTCTggagatttttttaatgcaggacTGTCTAGTTAAAAATATTGAgggtattttattatattgtaggtttttattaatgtaatgatAATTGGAAATACTCTGTCCAGTGGAGAAATCGTGTTAAGTTATTTGGTAGTTCTTTTGGTACAAGGCGTTTAGTACTATAGCCATGGTGAATTTAGAAAAACTTTGTCTCACCAGACAGGAAAATAATCCATATTCTCCTGTTCAGAGTCTACCTGATGATTTAAAGGATGATTACCTATGCACTGAGTTTGAGGAAGGATGTGGGACCAGAGCAGCAGCTTTTCACTGCCATAACAGCAGAGCAGCCTGGGCCCAAAACGAGGAGAAATCGGGTGCTTGGAGGAAGCTGTTAATCACATCCATTTTGTGTTTGGTCTTTATGATTGGAGAAGTAATTGGTGGTTATGCTGCCCACAGTCTTGCTGTAATGACTGATGCTGCTCATCTTCTCACCGACTTTGGCAGCATCCTGATCAGCCTCTTCTCCCTGTGGATCTCCTCAAGACCTGCTTCCAAAACCATGACATATGGGTGGCATCGATCAGAGGTTCTGGGCGGTCTTTTGTCTGTGCTGTCCATTTGGGCTGTGACTGCTGTGCTGGTATTCATTGCCATTCAGAGGATCCTCCAAAATGACTACGAGATTCACAGCGGTGCCATGCTCATCACCTCGGGTTGTGCTGTCATAGTTAACATCTTAATGGCCCTAATTCTCCATCAGTCTCCAGCACATCATGGTCACAGCCATGGTCACAGTAACACCAGTGTGAGGGCTGCTTTCATCCATGTGGTGGGAGATTTGCTGCAGAGCCTGGGTGTTGCGCTAGCTGCCACAATCATCTACTTTTGGCCTGAATGGAAAATAGCGGATcctgtttgtacttttttattttccatactTATTCTCGCTACAACATCCACAATTCTGAAAGACATCTTCAAAATACTCATGGAAGGAACACCGCATGGAATAGACTTTGATTTTGTGAAAGAAGCTCTGCTCGCAGTCAGAGGCGTCAAATCTATACACAGTCTCCATCTCTGGGCGCTGACCATGAGCCAACCTCAGATATCTGTCCACACAGTGATTGATGAGCAGACCAGTCCACAGACTGTCCTCTTGGATCTGACAGAGATGCTCCAGTCTGATTTTAACTTCCACAACATCACCATTCAAATAGAGACATACTCAAATGATGCAGCTCACTGTAGAGAGTGCCAGGACCCCATTGACTGAACTACTGAAGTTGAAGGACAGACAGGACATCTACATTTCAACAATGAAGCTCCAACATTGTGTTTGTATGAACTGTATAACTTAACTTAAATGATGCAAAACATGGTGTTCAGAGCAGTTACCTTTCAGAGCTTGATTTTCAGTGCACCCGCTTTCTCTGCTAATTGTCAGTTTAGACTAATTTACACCAATAAAGAAGTTACATACATTAA

Function

GO:

id name namespace
GO:0071577 zinc ion transmembrane transport biological_process
GO:0072511 divalent inorganic cation transport biological_process
GO:0005385 zinc ion transmembrane transporter activity molecular_function

KEGG:

id description
K14689 SLC30A2, ZNT2; solute carrier family 30 (zinc transporter), member 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022673010.1 True 1516 mRNA 0.43 8 24742969 24747805

Neighbor

gene id symbol gene type direction distance location
LOC103030357 LOC108270045 coding upstream 172 24737013 ~ 24742797 (+)
tp53i3 tp53i3 coding upstream 6592 24732177 ~ 24736377 (+)
LOC103029186 cenpo,LOC103029186 coding upstream 12951 24726218 ~ 24730018 (+)
ankrd66 ankrd66 coding upstream 57109 24682186 ~ 24685860 (+)
LOC103027511 NA coding upstream 63729 24673440 ~ 24679240 (+)
fuca2 fuca2 coding downstream 18176 24765981 ~ 24771053 (+)
LOC103032669 NA coding downstream 25001 24772806 ~ 24793331 (+)
LOC103034484 LOC107576683 coding downstream 51227 24799032 ~ 24805385 (+)
LOC103033951 LOC108428726 coding downstream 60121 24807926 ~ 24813809 (+)
LOC103046279 NA coding downstream 67105 24814910 ~ 24826100 (+)
G83123 NA non-coding upstream 100314 24642392 ~ 24642655 (+)
G83121 NA non-coding upstream 106087 24636606 ~ 24636882 (+)
G83120 lace1,lace1a,LOC108428707,LOC108269919,LOC108239053 non-coding upstream 107771 24630873 ~ 24635198 (+)
G83116 NA non-coding upstream 123032 24619695 ~ 24619937 (+)
LOC111193227 NA non-coding upstream 166418 24572328 ~ 24576551 (+)
G83167 NA non-coding downstream 24077 24771882 ~ 24772793 (+)
G83180 NA non-coding downstream 90725 24838530 ~ 24840128 (+)
G83295 NA non-coding downstream 145438 24893243 ~ 24893639 (+)
G83307 NA non-coding downstream 184114 24931919 ~ 24932539 (+)
G83354 NA non-coding downstream 380155 25127960 ~ 25187909 (+)
G82853 tulp4,LOC108428686,LOC107589648,LOC107734174,LOC107692724,LOC107742753,LOC107653590 other upstream 600737 24139389 ~ 24142232 (+)
G82811 psma3,LOC107729246,LOC107725600 other upstream 768994 23909682 ~ 23973975 (+)
timm9 timm9,LOC107729247,LOC107693171,LOC107689314 other upstream 865199 23875439 ~ 23877770 (+)
G82609 baz1a other upstream 1511651 23230430 ~ 23231318 (+)
G82488 NA other upstream 2384834 22357644 ~ 22358135 (+)
ephx2 ephx2,LOC107733988,LOC107692411,LOC107653762 other downstream 148089 24895894 ~ 24924815 (+)
LOC111193228 NA other downstream 186359 24934164 ~ 24936186 (+)
c9h8orf74 NA other downstream 282192 25029997 ~ 25034121 (+)
supt3h supt3h other downstream 413113 25160918 ~ 25329482 (+)
LOC103033015 LOC108423550,LOC108270308 other downstream 1171752 25919557 ~ 25975283 (+)

Expression


Co-expression Network