crls1 (crls1,LOC107663140,LOC107738554,LOC107678734,LOC103476593)


Basic Information

Item Value
gene id crls1
gene name crls1,LOC107663140,LOC107738554,LOC107678734,LOC103476593
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 25684805 ~ 25690894 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022673052.1
CCTGGAGCAGGGGAAGGTGAGCGAGGCGGGCGGTGGACCGGCGGGACGGAGGACGGAGCTCCGGGGGAAATGTGCGCTCTGCTACAGGCGGTTTATAGACTCAAGACAGGCTGAAAGCGCGTGTGCGAGATGAGGAATGAGGCTGAGTAGGGCGGCGTGTCTGTAGCTGGTGATATAAACTGGGTTTAAGTGAGGAACGGGAGATGTTGGCAGTTTGTAAACAGAACTTGCTGCTGCTGAGCTGTGCGAGAGGGCACGTAGCTCGGCTTAGTGTCACTAATGTTGTGGCCAGCAGGCACCAGCATGGCTGGGGCTGGACTCGGCCCCCTGAGGAGCATGGCCACCAAATTCTCCAGACTAAAACTGTGACAAAGTCGTTTCAAAGATTAAACCCCCAGTTCAGCAGTGCGGGAGCTCGGCCCGCGTGTGTTCACCTCCTCAGCGACCCCACCAGCCGTGAGAGAACCTCGGTGGAAGCCAGTCCGGAATGTATTATTAAATCAACCCTCAGAACAACCCCCCTCCCTGCGTTCAACAGACCAAAACTCCACAGCTCTTACCACAGCTTCCAGCTGCACCCATGCACCTGGCTCTCCAGTGACTGGGTCCATGCTGGAGCTCTCTCTGGGGTCAGAAGCTACAGCACTGTTCCTGAACCTCAAGTTCAGAAACCATCAGATCAAGAAGACAAGAGAGATGAAGCCACCCATAGTGCCTCCTCTGCCCCACCTTCAAACCAAGGATCCTTTAAAGAGCTGTATGAAAATCCTTGGACAATCCCCAATTTCCTCTGCATGGCTAGAATTGTACTGTCTCCTGTCCTGGGCTACTTGATTATGGAACAGTACTTCCATATATCTCTTGGACTATTTGTTTTGGCTGGAGCGACAGACTTGCTGGACGGCTATATTGCTCGAAACTGGCCAAACCAGAAGTCGGCACTGGGCAGCGCTCTGGATCCACTGGCGGATAAGATCCTTATTAGTGTGCTGTACGTCAGCCTCACATATGCACAGCTCATCCCAGtTCCACTCACTGCTCTGGTGATCTGCAGGGATGTAGCCCTGATTGCCGCGGTTTTCTATGTACGATACAAAACTGTTCCTCCTCCGGTTACCCTCAGCAAGTTTTTTAACCCATGCTACACTACTGCCCAGCTTAAACCAACACTTATAAGCAAGGTCAACACTGCAGTCCAGTTGTTGCTGGTGGCTGCATCACTTGCATCCCCAATTTTCCACTATACTGACAGTGTTTTGCTGCAGTCTTTGTGGTACTTTACTGCACTGACGACTGCAGCATCGGGTTACAGCTACTTTCATTATGGAAGGAAAACTGTTGAAGTATTGAACAAAACAAAGTAGTTGTCGTTATCTGTGTCATCAAGCAGATCTGGTCTGACGGTTAACTTGTTTGGATATCAGTTGAATGAACACTCTGTACGTACCTCAAGTTGATGCAGAGTTCCTGTTTAATCTGTAGCTGAATTGTTTCAGTGTACAGCAAGCTATTGAATTAAACTATTTTGATATCACACTATAGAACAATTATAATAGCTCTGGACAGTACATAATTATGTAATAAtggaatgttttttaaaataagtttctATCACCACAATCACAATTTTCTGATTAAAAATTTTGAATCAAACAGTATTGTAAGCATTTACTGTATGATGAAAGCAAGATGTCTTATGATGAGATATCTATGAGATATCCATTTTGAATGAAGTGCAATTGTGCTCAAACAATGCACAGGGGCTAAACCAATGcaaatattttgtcacatttgcAGTTCATCAACTGTAAACCTAGCTTAACACtaacagttttaaataatttgctATGAATAATCATAGAAAATAGGAATCAAATCAAAATAATTGATTGCTGAAAAATTCCTGAATGTCTAATTTGGAGAAGATTTTGTGTAtgatttaaatcattaaaagcTTTAAAGAGTT

Function

symbol description
crls1 Predicted to enable cardiolipin synthase activity. Predicted to be involved in cardiolipin biosynthetic process. Predicted to act upstream of or within phospholipid biosynthetic process. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in mitochondrion. Orthologous to human CRLS1 (cardiolipin synthase 1).

NR:

description
cardiolipin synthase (CMP-forming) isoform X1

GO:

id name namespace
GO:0008654 phospholipid biosynthetic process biological_process
GO:0016020 membrane cellular_component
GO:0016780 phosphotransferase activity, for other substituted phosphate groups molecular_function

KEGG:

id description
K08744 CRLS; cardiolipin synthase (CMP-forming)

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022673052.1 True 1966 mRNA 0.45 7 25684805 25690894

Neighbor

gene id symbol gene type direction distance location
mcm8 mcm8,LOC107594086,LOC107678783 coding upstream 967 25667699 ~ 25683838 (+)
clic5 clic5,LOC105909474,LOC103355727 coding upstream 575055 25098039 ~ 25109750 (+)
enpp4 enpp4 coding upstream 589662 25087603 ~ 25095143 (+)
xkr6 xkr6,xkr6a,LOC108269486,LOC107693112 coding upstream 613700 25045713 ~ 25071105 (+)
LOC103039108 NA coding upstream 676028 24998335 ~ 25008777 (+)
gdf3 gdf3 coding downstream 24164 25715058 ~ 25717446 (+)
LOC103021856 bmp2,LOC108414145,LOC108270435 coding downstream 27580 25718474 ~ 25724909 (+)
LOC103033987 plcb1,LOC103033987,LOC108423552,LOC107663155,LOC107678738 coding downstream 144246 25835140 ~ 25916844 (+)
LOC103041814 LOC108423416 coding downstream 637907 26328801 ~ 26330956 (+)
LOC103041516 NA coding downstream 641033 26331927 ~ 26335823 (+)
G83456 NA non-coding upstream 147535 25517590 ~ 25537270 (+)
G83449 NA non-coding upstream 189145 25495158 ~ 25495660 (+)
G83446 NA non-coding upstream 220552 25463900 ~ 25464253 (+)
G83440 cdc5l,LOC106599718 non-coding upstream 297215 25370251 ~ 25387590 (+)
G83522 hao1 non-coding downstream 107566 25798460 ~ 25802452 (+)
LOC111193229 NA non-coding downstream 293787 25984681 ~ 25993012 (+)
G83601 NA non-coding downstream 544022 26234916 ~ 26235175 (+)
G83649 NA non-coding downstream 619815 26310709 ~ 26310948 (+)
G83661 NA non-coding downstream 648288 26339182 ~ 26339699 (+)
supt3h supt3h other upstream 355323 25160918 ~ 25329482 (+)
c9h8orf74 NA other upstream 650684 25029997 ~ 25034121 (+)
LOC111193228 NA other upstream 748619 24934164 ~ 24936186 (+)
ephx2 ephx2,LOC107733988,LOC107692411,LOC107653762 other upstream 759990 24895894 ~ 24924815 (+)
G82853 tulp4,LOC108428686,LOC107589648,LOC107734174,LOC107692724,LOC107742753,LOC107653590 other upstream 1542573 24139389 ~ 24142232 (+)
LOC103033015 LOC108423550,LOC108270308 other downstream 228663 25919557 ~ 25975283 (+)
G83602 NA other downstream 544604 26235498 ~ 26253602 (+)
c9h14orf132 csgr16h14orf132,LOC108423442,LOC108269530,LOC108413331,LOC107582175 other downstream 584107 26275001 ~ 26305383 (+)
LOC103031022 LOC103031022,LOC108423548 other downstream 630291 26321185 ~ 26327338 (+)
spata7 NA other downstream 701996 26392890 ~ 26399267 (+)

Expression


Co-expression Network