stxbp6 (stxbp6)


Basic Information

Item Value
gene id stxbp6
gene name stxbp6
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 26795808 ~ 26897068 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022673069.1
CAAACGCAGTCCGGTCCGCAAAGCGCGAGGCTGTGGtttcctcctccacacactccctctgcactcacacacactctcactgtgTCTCAGAGAGCAGCTCAGCTCGGCGCGTGGGGGCTGCGGAGACCCTctatccttttctctctctctctttctctctctctctctctctctctctctctctctctctctctctctcaccccctGCAGAGACAGACCCGACATGCCGCTCATGAGTTTGAGAAGATAGCTATCACTCTCTGGACTGTGGAAGCGGACTGGAGCTGCTCATCTCCAGCACAAGACGGAGAGAAGTTAACCAAACAAACCTTTACAGAGTGAAGAGCTCAGAATCTTCTTTTGTGTCCACCACTGTGCCAAGCCACGATGAGCGCCAGATCAGCCATCAACAAGGAGATCTTCACACCGCACGATGAGCGGATGCTGGCGGCTGTGCAGGTGAAGAGGAGAACAAAGAAGAAGATTCCTTTCTTGGCTACTGGTGGCCAGGGCGACTACACCACCTTCATCTGTCTGTCGGTGACCAACAAGAAGCCGAACCAGGTGTCCATCACGAAAGTGAAGCAGTTTCAGGGCTCCTCTTCCTTTGCCAGGAGATCACAGTGGACCCTCGACCAGCTGAGGCAGGTGAACGGCATCGACCCCAACAGGGATTGTCCAGAGTTTGACTTGACGTTTGAGAATGCGTTTGACCAGTGGATGGCCGGCTCGTCTGGAGACAAGTGCATGTTCATTCAAGTCCTTCACAACACCTGCCAGCGCTACAGCGCAGATAGAAAACCTGAATTTGTCAACTGCCAGTCTAAACTGCTGGGAGGCAACAGCATCCTGCACTCTGCAGCAGACAGTGTGACCAGTGCTGTGCAGAAAGCCAGTCAGGCCCTGAACGAGCGTGGAGAGAGACTGGGTCGGGTGGAGGAGAAGACTGGAGATATGATGAACAGCGCCCATCAGTTTGCTGATACTGCACACAAGCTGGCCATGAAGCACAAATGCTAAACTGTGCCAAACCCTCAGCGGGCTCTGCCAAGGATGACTGGCACATGTACAGTGGAtggattttagattttatccttttttttaagaaaaatgaagaTTACTATTATGACCTAAGAGCGTTTTTAATTTTTACGTCCTCCTGACGTTTCCTGAAGAAAAGGTGAGTGGGACATTCTGAAGCAGCTTTAGGTCACGTTCTCCTTCCTGGCTCTTGATGTGCAGTTCTTATCAGGAACACTGCAGACGGGCAGAAGAAGGGCACAGCTTTCCGGGAGAACTGACCACAGTACAACATGAAGACATGTAGAGCAGGGGGGCGCTGGATTACTTTTGAACAGTTAAACTGGAAAAACCCAGGACTAAGTGATTTATTAGCCATGACTTAATGGGTTCACTTACTATATCTCCGTATATCTCATTATGTACTGTATCCCATTAACCATGTAGTGTTTTTCAGACTtccatttccatttttggaGAGAGCTGAAGGTTACCTGCCAGTATTCCTGTTTTAGGACATGTGAGATGTGTGGAATATTGCCCAATTTACTCCAAATATTAATATCGACATATACTGTAAGAATGGGTTTGGAAAAATCTCTGAAAGTACAGCTctaaaattatacataaaaatagtttttggaCTTAGACccactttacacatgcagtacATACACAAAtaagccataacattagcaccactgATGGGTTAAGTGGAAAACACTGGGTGTGAAAGGGTGGGATGTATTTGTCAGCAAGTGAactgttggtttgttttaaaaGCAAGAAAACTGGATCTACACCACTTAGATAACATCTCCAAAATATCAGGCAGGTGCAATAAAGGACCTAACTTACAGgacttaaaggatctgctgctaatgTTGTCTTAGTGCTAGATGCCAGAGTTCTTGTGGAGTCTGTGCCTTAATTCTCTGTTCAGTGTTAGACaggtggtgctaatgttatggctgattgttgTAGATATGTGCttaagaaaaatgaaatattaattaatatgatTGAAATATCAGGGTTAGTGATGAGATGGAAATAGTCATTTTTCCCCTTTATGTGTAGTAGAGATTACTTTTTGTGACCAAAATATGAAATTACTTTgggcctgtttacacctgtcattaatgtttgttttgtatCTGGATAGTATCTGAATAAACTTTGACCGGATTCTGTTTAA

Function

symbol description
stxbp6 Is expressed in notochord and otic vesicle. Orthologous to human STXBP6 (syntaxin binding protein 6).

NR:

description
PREDICTED: syntaxin-binding protein 6

GO: NA

KEGG:

id description
K08519 STXBP6; syntaxin-binding protein 6

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022673069.1 True 2218 mRNA 0.45 6 26795808 26897068

Neighbor

gene id symbol gene type direction distance location
LOC103023862 ddhd1 coding upstream 79793 26693418 ~ 26716015 (+)
bmp4 bmp4 coding upstream 182044 26604718 ~ 26613764 (+)
snx14 snx14 coding upstream 289296 26488033 ~ 26506512 (+)
LOC103026145 LOC108270054,LOC108423543 coding upstream 311186 26474775 ~ 26484622 (+)
LOC103029223 akirin2,LOC100499587,LOC100379102 coding upstream 361616 26425098 ~ 26434192 (+)
c9h15orf41 cunh15orf41,c9h15orf41,cssa01h15orf41,clg19h15orf41,LOC105897278 coding downstream 531684 27428752 ~ 27506291 (+)
spred1 spred1 coding downstream 873725 27770793 ~ 27813908 (+)
LOC103043868 atxn3,LOC108423524,LOC106596382,LOC107575702,LOC107683100 coding downstream 951609 27848677 ~ 27855382 (+)
LOC103042318 LOC103042318,LOC108423523 coding downstream 958673 27855741 ~ 27858741 (+)
ddx24 ddx24 coding downstream 963126 27860194 ~ 27869973 (+)
G83761 NA non-coding upstream 71195 26724339 ~ 26724613 (+)
G83759 NA non-coding upstream 72803 26719635 ~ 26723005 (+)
G83760 NA non-coding upstream 76443 26718978 ~ 26719365 (+)
LOC111193231 NA non-coding upstream 229964 26507339 ~ 26565844 (+)
trnay-gua_9 NA non-coding upstream 287683 26508040 ~ 26508125 (+)
LOC111193232 NA non-coding downstream 7813 26904881 ~ 26924218 (+)
G83785 NA non-coding downstream 150478 27047546 ~ 27054268 (+)
LOC111193233 NA non-coding downstream 173637 27070705 ~ 27082187 (+)
G83795 aqr non-coding downstream 190132 27087200 ~ 27100573 (+)
G83805 aqr,LOC108423414 non-coding downstream 236907 27133975 ~ 27140397 (+)
fermt2 fermt2 other upstream 18320 26727823 ~ 26777488 (+)
spata7 NA other upstream 396541 26392890 ~ 26399267 (+)
LOC103031022 LOC103031022,LOC108423548 other upstream 468470 26321185 ~ 26327338 (+)
c9h14orf132 csgr16h14orf132,LOC108423442,LOC108269530,LOC108413331,LOC107582175 other upstream 490425 26275001 ~ 26305383 (+)
G83602 NA other upstream 542206 26235498 ~ 26253602 (+)
fam98b NA other downstream 918737 27815805 ~ 27822211 (+)
LOC103044189 LOC108423527,LOC107677688 other downstream 927188 27824256 ~ 27831584 (+)
LOC107197841 NA other downstream 2073196 28970264 ~ 28970839 (+)
LOC103045392 NA other downstream 2102434 28999502 ~ 29025114 (+)
LOC111193240 NA other downstream 2143911 29040979 ~ 29041607 (+)

Expression


Co-expression Network