LOC111193234


Basic Information

Item Value
gene id LOC111193234
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 27632645 ~ 27635407 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022673083.1
AAGAAAGCTGAATGGGAACCATGGAAAAGCTCACTACAACATCTAACACATTTGGAAGTTCCCAGAACTTATGTGAACCTTTCACTCTCCAAggcaaaaagaaaagagatccATGTGTTCTCAGATGCGTCCCCTGTAGCAATTGCAGCGGTGGCTTATCTGAAGGTGACAGATGCCAGTGGAACATGCAAGACCGGGTTCATTCTTGGGAAGGCAAAATTGGCACCTACTGCCGCGCATACAATACCCCGTCTGGAGCTAGGAGCTGCTGTGCTGAACTGGCAGAGCTTATTGAAGAGGAGTTAGATGTCAAACCAGACTTGATTGAGTTGTACACTGACAGTAAGGTGGCACTAGGATACATCTGCAATCAAACAAGGCACTTCCACATCTATGTCAGTAATAGAGTGCAAAGAATCCGAAGGTTTACCAGGCCAGAACAGTGGCATTACATACCTTCAAGTTTGAATCCTGCAGATGTTGCCACACGTTCTGTAACTGCTTCAAATCTGCAGAACTCTGTCTGGCTATCTGGACCTACCTTTCTCTCTGATCCTGATGGGTTCTCCACTGAAGAGAAATCTTATGAGCTCATCAACCCAGACTCTGACATTGAAATCCGTTCAAACTGCACTAGTGTAGCAGTTCATGTCTCTCAAGACAAGCTTGGATCTCATCGCTTTGACCGCTTTTCCAGCTGGAAGTCCCTCCTGCGTGCCACTGCCTGTCTTATCCATGTTATTCGCTCTCGAACATCTAATGCGGAGAAGAGTACCTGCAGTGGGTGGCATTATTGTTCAAGTCCTCGTACAGTAGATGAACTATCTCAAGCACAAAGAGCAATCTTTGGATGTGTACAGCAAGAAGCCTTTTCAAGCGAGTTAACGCTTTTGAAAACAGGGGAAAAAAATTCCAAGAGAAGCAGTTTGAGGAAACTACATCCAATAATCGATGATAAAGGTCTTCTGAGAATTGGAGGAAGACTGGATAATGCTCAGGTACCTTTTGATGAGAAACATCCCATCATTATCCCTGACAAAAGCCACATTGCGTCTCTACTTGTAAACCACTTTCATGAGCGTACCAAGCACCAAGGCCGTCTTTTTACAGAAGGAGCCATAAGAAGTGCAGGATTCTGGATCATTGGTGCAAAAAAGTGCATTAACAGGGTCATTCACCAGTGTGTTCAGAGGCTCAGAGGCAAAGCCACAGAACAACTAATGGCTGATCTCCCAGAGGACCGCCTCAAAACAGATCCTCCTTTTAGCTACATTGGCTTGGATGTATTTGGACCATGGACAGTCGTATCACAGCGCACCCGAGGAGGTTCTGTAAATAACAAACGATGGGCAGTCATCTTCACATGCCTGTGTGTCCGTGCTGTCCATATCGAGTTGATTGAATCCATGGACACATCTGGCTTCTTGAACGCACTTCGACGCTTCTTTGCCCTCAGGGGTCCTGTAAAACAAATACGCTCTGATTGTGGCTCCAATTTTGTGGGCGCTTGTAAAGAACTGCTCATGGTCCTGGAAGAACCAAGTGTAAAAACCTACCTAAGCGAAGAAGGTTGCAGCTGGGTTTTCAATCCTCCCCATGCCTCCCATATAGGTGGGGCTTGGGAGAGGATGATCGCCATTTGTCAACGTATATTGGATTCTATGCTCTTGCATACCCCTCAGCTACGACTTACTCACGAAGTGTTGTCTACACTTATGGCAGAGGTCTCTGCAATAGTGAATGCTAGACCTTTGGCTCCCATTTCCAGTGATCCTGATTCACCTGCTCCCTTGACCCCAGCCATGTTGCTAACCCAAAAGGTCGGCCCTCTCCTTCCTGTGCCAGGAACATTCGACACTAAAGACCTTTTCCGGCAAAAATGGAAGCAAGTACAACATCTTGCAAACGTCTTTTGGGAGCGCTGGAGACTTGAATACCTGTGCACTCTACAGAGCCGCAGGAAATGGCAGACTGAAAGGTCTGCTATCAAAGAGGGGGACTTAGTACTGCTGAAGGACATTCAAGTTAAGAGGAACGTTTGGCCTATGGCTCTCGTAACAAAAGTTTATCCTGGTAGCGACGGAAACCTCAGGAAGATTGAGCTGAGAGTCACTAAGGGTGGTACTGCAAAGACTTTCCTTAGACCAATTTCCCAAGTTATCCATCTTATGTCACCATAGTAGATGGACAAAAATTGATTGATAGTGCATAGTGGTATTTTACAATCCCAGACGGGGAGTGTTCTGAATTGTTTTATATACTGGATATTCCCTTTCtcagccactagatggcactgTTAATGTTTGTCAACTGTTCCTTTGATTAAGTCTGATTTGCTAGTTAAGTCACATGATGAGGTTTAAAGGTCAGTACAGCCATTTTAgattgagctgtgtgtgtgatgaagcAGGTGTAACTtcatctctctccatcctcacGTTTTGTGCCTTAGACATCACTGTTTtttcaCAAAAAGAAATTGGGAATCTGGATAAAGTAAACACTGAAGAAACTGAAACGCCTTTGGTCCAGCTCTTTATTCAACCCCAACTGTTTAGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022673083.1 True 2559 mRNA 0.45 2 27632645 27635407

Neighbor

gene id symbol gene type direction distance location
meis2 meis2 coding downstream 24003 27526742 ~ 27608642 (-)
dph6 dph6,LOC106512485 coding downstream 203844 27148597 ~ 27428801 (-)
aqr aqr coding downstream 492166 27079341 ~ 27140479 (-)
gjd2 gjd2 coding downstream 568811 27060524 ~ 27063834 (-)
LOC103024701 otofb,LOC108423539,LOC108269528 coding downstream 1098250 26508269 ~ 26534395 (-)
otub2 otub2,ddx24 coding upstream 230138 27865545 ~ 27873706 (-)
LOC103043263 NA coding upstream 239741 27875148 ~ 27880315 (-)
fam181a fam181a coding upstream 259548 27894955 ~ 27897940 (-)
unc79 NA coding upstream 293147 27928554 ~ 27997121 (-)
LOC103039744 NA coding upstream 437452 28072859 ~ 28079529 (-)
G83957 NA non-coding downstream 17937 27613245 ~ 27614708 (-)
G83950 NA non-coding downstream 55979 27524295 ~ 27576666 (-)
G83951 NA non-coding downstream 109783 27522095 ~ 27522862 (-)
G83923 cunh15orf41,c9h15orf41 non-coding downstream 160639 27465259 ~ 27472006 (-)
G83922 cunh15orf41,c9h15orf41 non-coding downstream 183098 27428892 ~ 27449547 (-)
G83973 NA non-coding upstream 68819 27704226 ~ 27704888 (-)
G84045 NA non-coding upstream 180443 27815850 ~ 27819864 (-)
G84063 NA non-coding upstream 217949 27853356 ~ 27855384 (-)
G84064 LOC103042318,LOC108423523 non-coding upstream 220868 27856275 ~ 27859160 (-)
G84083 NA non-coding upstream 363177 27998584 ~ 28005722 (-)
cga cga other downstream 1162482 26434472 ~ 26470163 (-)
G83612 NA other downstream 1628960 25992499 ~ 26003685 (-)
LOC103040243 tdh,LOC103040243,LOC108441731,LOC107561940,LOC107723287,LOC107589050,LOC107701506,LOC107746115,LOC105018021,LOC104922441 other downstream 2591591 25034004 ~ 25041054 (-)
LOC103026430 LOC108428707,LOC108269919,LOC107102228,LOC103379330,LOC101162185 other downstream 2996764 24630879 ~ 24635881 (-)
cunh6orf183 zbtb24 other downstream 3016029 24588941 ~ 24616616 (-)
LOC103043566 LOC108423527,LOC108270165,LOC100330554,LOC107677688,LOC103153288,LOC103458816,LOC106945627,LOC103355980,LOC102293757 other upstream 195221 27830628 ~ 27848444 (-)
G84215 NA other upstream 709182 28344589 ~ 28356545 (-)
rps6kl1 rps6kl1 other upstream 1040191 28675598 ~ 28694982 (-)
G84392 NA other upstream 1440069 29075476 ~ 29076115 (-)
G84579 nol10 other upstream 2173122 29808529 ~ 29810277 (-)

Expression


Co-expression Network