LOC111193237


Basic Information

Item Value
gene id LOC111193237
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 28355574 ~ 28356809 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022673103.1
ACAGGCCTTGAAATGGAAATGGCAAAGAAGAAGATATACTGTCTTGGCACAGTGAGGGCCAACAGACTGAAGGGTTGTTCACTGAAAAGTGACAAGGATCTGAAGACAATTGGTCGCGGCGCTTTTGATGAGAAAGTAGCCACTTTTGAGGGTGGGCAGCTCATTGCATGCAAGTGGCAGGACAACCGCACAGTGACAATGCTGAGCACATTTGCAGGGGCCTATCCAACTTGCAAGGTGAAGAGATGGGACAGGAAGCTGAGTAAGGTCACAGATGTACAATGTCCATCCTCTGTTGTGACCTACAATAAGAACATGGGAGGGGTGGACTTGATGGATTCATTGATTGCCCTGTACCGCACAAAGATAAGATCTCGAAAGTGGTACTTGCGCATCTTCTTTCATCTCATGGACATGCTCTGCGTAAATGCATGGCTTTTGTACCGCAGAGACTATCATGCATGTGTccaaaaaggaaaagaagagctTGGTCTGAGAGAGTTCAAGTCATCAGTGGCCGAAGTGCTCTGTAAGCAAGGATCAAGCAGTCAGCTAAAGCGTGGCCGGCCGAGCTCTGAGAGTTCTGACATGAGACGGCAGAAAAAGAGGGAAACAAAGCCCCAACAGGAAGTCAGGAAAGATGGCATGGCTCACTGGCCATACTATTCAGACAAGCAAGGACGTTGCAAGAAACATGGATGCACAGGCCAAACCAGAGTAATGTGCGAAAAATGTGGAGTCCACTTATGCTTCACGCCCAAGAAAAACTGCCTACGAGATTTTCATACATGAACTCCAAAGTTTGATCAAGTCAAATGAGATGAAAGAAATGATTTCATGATTATATGAGTTTAAAAGATAGTTTTGAAAGATTTTATGATAGTTCAGATTACAAAATGTTTTGTGGTAACCTCCTTACGTCCGAGTGTTGATCcaactatttttctatttttctaactattttaacttttttaaattgccAAAAAATTGCAGATAAATCTTTCTatctaaaaaatattgtttaatgttatgtttaaggtgttatctttttatcctacataaaataaaatgatttctgAATGGTATTATGACTTGGAAAATCTTTATCCCTAATGGGTCAAAGTAATTTATAAATGACATCCATAAAAATTCAAGGTCAAAGGTCAAAATTgagaaattaaaattaattactgaatttgacttaaaagacattaaaaataacTAGTTGTggaattt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022673103.1 True 1236 mRNA 0.39 1 28355574 28356809

Neighbor

gene id symbol gene type direction distance location
ift43 ift43,LOC107688076 coding upstream 35082 28297960 ~ 28320492 (+)
ttll5 NA coding upstream 90247 28182427 ~ 28265327 (+)
flvcr2 flvcr2,LOC106525280,LOC106571030,LOC108242486,LOC104964435 coding upstream 177870 28152935 ~ 28177704 (+)
jdp2 jdp2,jdp2a,LOC107701522,LOC107589793,LOC107702236 coding upstream 205465 28134313 ~ 28150109 (+)
LOC103036705 fos,LOC108423428,LOC107702235 coding upstream 224684 28127393 ~ 28130890 (+)
gpatch2l gpatch2l coding downstream 18728 28375537 ~ 28417805 (+)
esrrb esrrb,LOC107678144,LOC106611051 coding downstream 72137 28428946 ~ 28560094 (+)
dlst dlst,LOC107749530,LOC107702243,LOC103357959 coding downstream 305283 28662092 ~ 28675663 (+)
LOC103029222 NA coding downstream 382432 28739241 ~ 28748428 (+)
arel1 arel1,LOC107573237,LOC107744492,LOC107672354,LOC107704359 coding downstream 418340 28775149 ~ 28801239 (+)
LOC111193142 NA non-coding upstream 24166 28328775 ~ 28331408 (+)
G84001 NA non-coding upstream 432216 27923069 ~ 27923358 (+)
LOC111193235 LOC103459065 non-coding upstream 509608 27831977 ~ 27845966 (+)
G83972 NA non-coding upstream 650693 27704254 ~ 27704881 (+)
LOC107197843 NA non-coding upstream 740007 27604237 ~ 27615567 (+)
G84219 NA non-coding downstream 17139 28373948 ~ 28374517 (+)
G84264 NA non-coding downstream 230587 28587396 ~ 28587954 (+)
G84280 NA non-coding downstream 349084 28705893 ~ 28723051 (+)
G84291 fcf1,LOC107704360 non-coding downstream 413359 28770168 ~ 28772835 (+)
G84294 NA non-coding downstream 446305 28803114 ~ 28803321 (+)
LOC103044189 LOC108423527,LOC107677688 other upstream 523990 27824256 ~ 27831584 (+)
fam98b NA other upstream 533363 27815805 ~ 27822211 (+)
fermt2 fermt2 other upstream 1578086 26727823 ~ 26777488 (+)
spata7 NA other upstream 1956307 26392890 ~ 26399267 (+)
LOC103031022 LOC103031022,LOC108423548 other upstream 2028236 26321185 ~ 26327338 (+)
LOC107197841 NA other downstream 613455 28970264 ~ 28970839 (+)
LOC103045392 NA other downstream 642693 28999502 ~ 29025114 (+)
LOC111193240 NA other downstream 684170 29040979 ~ 29041607 (+)
LOC111193135 NA other downstream 686408 29043217 ~ 29043739 (+)
LOC107197844 NA other downstream 715082 29071891 ~ 29078898 (+)

Expression


Co-expression Network