rpp40


Basic Information

Item Value
gene id rpp40
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 30883308 ~ 30892684 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022673164.1
TAGGGGGCGGCAGGGGCGCGAGCGGGTCAAAAACACGGTTCAGCCGGCATGGTGAGCAGTGCTGTACTGTCAGTGTGTCTCCCCCCTGCTTtattataaattagtttttaataataacacaattaaACAGAGTAAGATGAGcccggagctggagcagtgcCCGCGGAGTCTGTTAGTGTGTGAAAAAGGAAACTTCAAAAATGAGAAATCCCGCCATGAATCCCAGGCGCTGAAACACAGCTTTAACTGCAGGaTTTCCTTATTGATACCTGAGTGTGGAAGACTGCCTGTGATGCTGGAGAAAGTACTTAGTAATTTCAGCTCATATTTCCATGTCCAAGACTTTCCAGTTTCTACATTCCTGGAAGAGAAATGGCTGGATGCAGTGAAGAAAGGAGGTTTCTATGCACTGTCTTCCAAAACCAGAATTGATGAGGACAATGTTGTTGCTGTTTTGCCCAGCGgTCAGCTGATCTTGTCTCTGGATAAGGACACATATGAGCAGCTGGGCCTGGAAGGAAGACCTTCCCAATACAGTCACAGAAAGACCGTCAGACACAttgtTACTGTGGATCTTAAATCTTTGGTTCTGGGCACGAAGAAATATCAGCGGGTTCTGCTGTGTCTGAAAGAGAGAGTTCCACTGAAAACCGACTTCCTCTTTACAGCTGCAGGTGGAGCTGTATCTCTCCTGGACCTGCTGTCGAAGCAGTTGTATGAGGAGTGTAGACCTGCTCTCCACTGCCGGACTCTGCAGGACCTCCTGTGCCCCTCGCTCATCCCCTCTGACCTGAAGGGGGAGAGCGGTTCTGTCACGCCGACCCAGTTCCTGGAGTGGCTGGGGGCGGTCAGTCTCAGTATCAGCTGTGATAATCAGGCGACCAGTTTCCTGTCCACCTACGCGTGTCCAGAGCCTCAGAGCTCGGTCAGTCAGGCTCTGCTGTGCACAGTGACCGGCCTCATCTCCCCGCAGGACGTCTGCAAACTGCTGACAGAAATCAGACGTTATCTGGATGAGCCGAAGTTGACGAGTTGGGTCTCGCTGACGGTACACGGCTGTGCAGACAGTCCTGTGTCCTGGGGATCAGCGGAACATGGGTTCCACAAAGGTGGAGAAAACTTCTACAACTTCGTTTGCTTCCAGAACCAAGACTACTGGTTACATATGGCTACTGGAGCAAAAGACGCCTGTCCACCTTGATGAACTGGACTTGGCCTGAAGGGGGAAAAAACAGAcataaatttttattttgaataaatcTCATTTAGAGACTCactgtttagttttgttgctTTCGAGCTGTTTCTGTACATACGGTTTGTGTTTGCTTTTCTGCAGCTCATTAAGTTGATTCATTAATTAAACCTAATGCAAGTA
>XM_022673165.1
TAGGGGGCGGCAGGGGCGCGAGCGGGTCAAAAACACGGTTCAGCCGGCATGGTGAGCAGTGCTGTACTGTCAGTGTGTCTCCCCCCTGCTTtattataaattagtttttaataataacacaattaaACAGAGTAAGATGAGcccggagctggagcagtgcCCGCGGAGTCTGTTAGTGTGTGAAAAAGGAAACTTCAAAAATGAGAAATCCCGCCATGAATCCCAGGCGCTGAAACACAGCTTTAACTGCAGGaTTTCCTTATTGATACCTGAGTGTGGAAGACTGCCTGTGATGCTGGAGAAAGTACTTAGTAATTTCAGCTCATATTTCCATGTCCAAGACTTTCCAGTTTCTACATTCCTGGAAGAGAAATGGCTGGATGCAGTGAAGAAAGGAGGTTTCTATGCACTGTCTTCCAAAACCAGAATTGATGAGGACAATGTTGTTGCTGTTTTGCCCAGCGgTCAGCTGATCTTGTCTCTGGATAAGGACACATATGAGCAGCTGGGCCTGGAAGGAAGACCTTCCCAATACAGTCACAGAAAGACCGTCAGACACAttgtTACTGTGGATCTTAAATCTTTGGTTCTGGGCACGAAGAAATATCAGCGGGTTCTGCTGTGTCTGAAAGAGAGAGTTCCACTGAAAACCGACTTCCTCTTTACAGGTGGAGCTGTATCTCTCCTGGACCTGCTGTCGAAGCAGTTGTATGAGGAGTGTAGACCTGCTCTCCACTGCCGGACTCTGCAGGACCTCCTGTGCCCCTCGCTCATCCCCTCTGACCTGAAGGGGGAGAGCGGTTCTGTCACGCCGACCCAGTTCCTGGAGTGGCTGGGGGCGGTCAGTCTCAGTATCAGCTGTGATAATCAGGCGACCAGTTTCCTGTCCACCTACGCGTGTCCAGAGCCTCAGAGCTCGGTCAGTCAGGCTCTGCTGTGCACAGTGACCGGCCTCATCTCCCCGCAGGACGTCTGCAAACTGCTGACAGAAATCAGACGTTATCTGGATGAGCCGAAGTTGACGAGTTGGGTCTCGCTGACGGTACACGGCTGTGCAGACAGTCCTGTGTCCTGGGGATCAGCGGAACATGGGTTCCACAAAGGTGGAGAAAACTTCTACAACTTCGTTTGCTTCCAGAACCAAGACTACTGGTTACATATGGCTACTGGAGCAAAAGACGCCTGTCCACCTTGATGAACTGGACTTGGCCTGAAGGGGGAAAAAACAGAcataaatttttattttgaataaatcTCATTTAGAGACTCactgtttagttttgttgctTTCGAGCTGTTTCTGTACATACGGTTTGTGTTTGCTTTTCTGCAGCTCATTAAGTTGATTCATTAATTAAACCTAATGCAAGTA

Function

NR:

description
ribonuclease P protein subunit p40 isoform X2

GO: NA

KEGG:

id description
K14530 RPP40; ribonucleases P/MRP protein subunit RPP40

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022673164.1 True 1378 mRNA 0.49 8 30883308 30892684
XM_022673165.1 False 1372 mRNA 0.49 8 30883308 30892684

Neighbor

gene id symbol gene type direction distance location
LOC103037625 LOC103037625 coding upstream 136445 30713604 ~ 30746863 (+)
LOC111193145 NA coding upstream 251676 30627847 ~ 30631632 (+)
LOC103031349 ece2 coding upstream 319514 30425710 ~ 30563794 (+)
yeats2 yeats2,LOC107578903 coding upstream 556156 30257792 ~ 30327152 (+)
LOC103029649 klhl24,LOC107659963,LOC107721788,LOC107663692,LOC107721905 coding upstream 644783 30196717 ~ 30238525 (+)
LOC103044961 NA coding downstream 30285 30922969 ~ 30938428 (+)
znf407 LOC104944474,LOC104948785 coding downstream 49992 30942676 ~ 30991541 (+)
tshz1 NA coding downstream 137327 31030011 ~ 31049206 (+)
znf236 znf236 coding downstream 260925 31153609 ~ 31238682 (+)
LOC103047815 galr1,LOC102797365 coding downstream 496767 31389451 ~ 31410793 (+)
G84877 NA non-coding upstream 77566 30805201 ~ 30805742 (+)
G84870 pik3cb non-coding upstream 112225 30770601 ~ 30771083 (+)
G84858 NA non-coding upstream 176125 30704476 ~ 30707183 (+)
G84831 NA non-coding upstream 194147 30686920 ~ 30689161 (+)
G84806 NA non-coding upstream 288900 30593633 ~ 30594408 (+)
G84906 NA non-coding downstream 5235 30897919 ~ 30899179 (+)
G84881 LOC103044643,LOC108428349,LOC107585172,LOC107688461,LOC107722553,LOC107680226,LOC107589802,LOC107718075 non-coding downstream 20199 30912883 ~ 30922290 (+)
G84997 NA non-coding downstream 157726 31050410 ~ 31050652 (+)
G84998 NA non-coding downstream 158143 31050827 ~ 31051026 (+)
G85020 NA non-coding downstream 350795 31243479 ~ 31259853 (+)
alg3 alg3,LOC107660011,LOC107730451,LOC107749127,LOC107557882,LOC107692886,LOC107600115 other upstream 268246 30606757 ~ 30615062 (+)
LOC103025336 rhob,LOC103025336,LOC105888539,LOC105907285,LOC106607565 other upstream 868128 29967550 ~ 30015180 (+)
LOC107197844 NA other upstream 1804410 29071891 ~ 29078898 (+)
LOC111193135 NA other upstream 1839569 29043217 ~ 29043739 (+)
LOC111193240 NA other upstream 1841701 29040979 ~ 29041607 (+)
pnisr pnisr,LOC102782257 other downstream 562300 31454984 ~ 31469556 (+)
LOC103034273 LOC103034273,LOC108415529 other downstream 857019 31749703 ~ 31805403 (+)
G85189 NA other downstream 930902 31823586 ~ 31824388 (+)
LOC103035447 vegfa,vegf,LOC106584182 other downstream 1306499 32199183 ~ 32218762 (+)
LOC103037843 pnrc2,LOC108441235 other downstream 1543533 32436217 ~ 32441318 (+)

Expression


Co-expression Network