LOC103035585 (LOC108423467)


Basic Information

Item Value
gene id LOC103035585
gene name LOC108423467
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 32729119 ~ 32923000 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022673187.1
TCGGCGTTCCTCTGCAATCTCTCTGAGCTCAGAGCTCGTCCACCGAGAGCCTGAAGAGCCAGAGCGTCCACCTCCGGCCCTGACAGCCCCCCGACATCAGGGCATGCGCGACACCGCCGGACACAGTGACCACAAAATGGCCGAGGGGCAAGGCCTGGTCTCGGGAGGCCAGGCTTCACCCCCCGCCGGCTCTCCCGAGACAGCGGCCGAGCTGAGCAGGGCGGAAGAGGGTCTCGCAGGCCCTTCCCTGACCCCGTCCGGAGGGGGACGGGCTCTCTGCCGCCCCTGCTGCCTGATTCTGATGCTGATCTTGCTGCTCCTCTCTTTCCTTGGCAGCTGGGCGGTGGTGCACCTCAGCCTGGGGTCCAGGGACAAGCCCTTCCGGATCTCATCCAGTTACGACCAGCCCGGAGAGCAGGAGACCGCCACCTACGACCCCCTCTTCATCACCAACTGCACCATGGAGACCTCTCGAAATGTCACCCTGGAGGGCCACTACCACTGCAGAGAGGGTCAAGATATCAGCCTGGGCCAGCTGTGTGACTTCACTCCTGATTGTCCGCAGGGGGATGACGAGGGCGAGGCATGCCGTCAGTTCCTCAATGGCAGCTACTGCTCTTTTGAAGACGGTGATTGTGGATGGCAGCTAGTGTCAGGCAGAAGTCCCTACAAGGTGGTCTATCCCTTCCTACCCAAAGGGCTGCGGAGCACATGTCCATCATCAGGAGCTGTTTTGGCTGTAGAAAGTCAATCCAAAGGTCAACGGGGGTCAGTAGTCGTGCGGAGTCCACTCTTCCTCTACCCTCTGAGGAACGCTCCGTGCATGGTCCAGTTCCAGGTGTGCGGGAACACGAGAGGTGCTCTGTCTCTCTGGATCATAGAGAACAGCACAGGACTTGATGGCCAAAGAAGTCTATGGAACTCTAGCAGCGAAGCCACGCTAGACAAAGGCTGGAGGTTCATCACGTTTCCTTTATTTGGATTGGTCGACTCGTTCTACCTCCAGTTCGTTGCAGACATCTCTCCTGACTCCGACGCTGCATTTGCGGTGGATAATTTCACTCTCAGCATGAACTGCTTCCTCGCAAcTAATGGAGAATTCCCTCCAGTGGTTCCAACAAGTCCAGCAGAAGGGAAGTTCAGACCCACGAGTCCAATCAGGACCACCTCAACAGCAGGTGGAGGCTCAGGAGCTCTGTCCCTGCCGCCCACGCCAGCAGACTccATGAAATGGTTTTTCCACCCTTGTGGGGCCTCAGGACCAGAAGGCCCTACCCCTTCTCAGTGTGCCAATGCCTACCGTAACGCCAACGTGAACGTGACTGTGGGGACGAAAGGAGTGCTGAGGGGCATTCAGATGTGGAGGGTTCCAGAAACTGGAATTTACAGGATCACGGCTTACGGTGCGGCAGGTGGACGCAGTGTTCTGAGCACGCTCAGATCGCATGGCGTCTACATCACAGCAGACTTCAAGCTGCTGAAAGACGAGGTGCTGTTCATCCTTGTGGGACAGAAGGGAGAAGACGCGTGTCCCAGAGCTGCGGAGCCTCTGAGGCAGGTTTGTCTGGATCAGAAAGGCCCTCCGAACAGCACCAGCATGCTCAGAGggggagcaggaggaggaggcggggcTACCTACATTTTTAAGGTGGAGAACGGAGTGTATGTTCCTCTGCTCATCGCTGCTGGAGGTGGAGGTCGAGGCTACAGCAGTCACTCAGAGAACCAAGAGGAGGACGTGGAGCATGACCCCAGCGTCCCCGGCCGCAACGGTATTTCAGGAGCTGCTGGTGGTGGTGGAGGCTGGAACGACAGCGCTCCTAAAACTCAGGGTGGACGTCCGCTGGTTCTTGGAGGTCAGGGAGGAGAGCCGTGTGATACTCAGGGCTGGAAGACCCACGGGGGCTTCGGGGGAGGTGGAGGAGCCTGTAccagtggaggaggaggaggaggctaCAGAGGTGGCGGTGCTTCAGCAAACAATGACCCTGAACAGGATGGAGAGGATGGAATCTCTTTTATTAGCCCTGATGGAGAGATATTTATGGATGCACTCAAAGCCATGGAGGGTGACGGTGAAGTGATCATTAACCCGGTACAGAACTGCAGTCACTGTGAGTCGGGAGAGTGCCGCGAGACGTTAGAGGGAACGGAGTGTTACTGTGATGAAGGTCTTGTCTTGGCCAGTGATGGAGTGCTCTGCCTCAACGCTACAGAGATTTCTCTGCTGCAtccgccctctctctctcacctggcTCTGGGGCTGTCTGTGGGCACCTCTGCACTCATCGCCGCTCTGCTGCTGGCCGTGTCCGGAGTCATGATCATGTACAGACGCAAGCACACCGAGCTGCAGTCCATTCAGCTGGAGCTGCAGAGTCCAGACTGCAAGCTGAGTAAACTGAGAGCATCCACCATCATGACCGATTATAACCCAAACTACTGCTTCGCTGGAAAGGCGGCATCTGTGAACGACCTGAAGGAGGTTCCCCGCCGCAACATCTCTCTGACCAGGGGTTTGGGGCATGGAGCTTTTGGAGAGGTCTATGAGGGTCTGGCAGTTGGAATACCAGGTGAACCCAGTCCCATGCAGGTAGCAGTGAAGACGCTCCCTGAAGTGTGTTCTGAGCAGGATGAACTGGACTTTCTGATGGAAGCTCTCATAATCAGTAAGTTCAGCCATCAGAACATAGTGCGGTGTATAGGCGTGAGTTTACAGGCTCTGCCACGCTTCATTCTGCTGGAGCTGATGGCTGGAGGAGACCTCAAGAGCTTCCTTAGGGAGACGAGACCCAGACTGGAGCATCCCTCCAGCCTCACCATGGTGGACCTTCTCAATATAGCGAAAGACATAGCACGTGGCTGCCAGTACCTAGAAGAGAACCAGTTCATTCACAGGGACATTGCAGCAAGGAATTGCCTGCTCACCTGTAAAGGCCCTGGAAGAGTGGCCAAAATCGGAGACTTTGGGATGGCCAGAGACATCTACAGAGCCAGTTACTACAGAAAAGGGGGTCGCGCCATGCTGCCTGTGAAGTGGATGCCTCCCGAGGCTTTCATGGAAGGAATTTTTACCTCCAAAACTGACACATGGTCTTTCGGAGTGTTGCTGTGGGAGATTTTCTCTCTGGGTTACATGCCCTACCCCAGCCGCAGTAATCAGGAGGTCCTTGAGTTTGTCACTAATGGAGGCAGGATGGACCCTCCACAGAACTGCCCTGGTCCAGTATATCGGATAATGACGCAGAGCTGGCAACACCAACCTGAAGACAGGCCAAACTTCTCCACCATCCTTGAGAGAATTGACTACTGTTTGCAGGATCCAGACGTGGTGAACGTGCCACTGCCGGTGGAGTATGGCCCCGTGcccgaggaggaggagagggtaCCCATGCGTCCAGAGGATCCCGCCGCTGCCTCTCTGCTCGTGGCCCCTCAGGGCGGGGAGGAGGCTGCAGCTTCCGCCCCCTCGTCCCGCTCTGAGGAAGCCAAGAGGGCTGCTGAGGCTCTGTTGATGGGTGGCCACCTTGCTGATGGCAAgcctggagctggagctgtacCTGTACCTGGAGCTTTACCAGGACCTGGAGCTGCTACATCTCAGCCCCACCCGCACCCGCAGGTGGCATCAGTACCTGGGCAGCTGGCATGCAACAAGACTACTGTTGTGCCCACCTCATCCCAGGATGGAGGCCACGTAAACCTGGGCTTCACTCAAGGCCACCCTGGTGAGAAGGAAAGCCGCAATGGGAAGCCTACTAACCTTTGGAACCCTACTTATGGATCATGgttcctccagcagcagcagaagcgaCAGCAGGCTCAAGCTCAGGCTCAGGCTCAGGCTCAAGCTCAAGCCCAAGCTCAAGCTCAAGCTCAAGCTCAAGCTCAAAGGCAGGCCCAGCAGCGACTCCCAGCTGAAGGTCAGGAGCACTCGGGCAGGACTGTGACAGTGGCCGAGGCTCTGGGCCTGCAGCACCAGCAcaagcagcaacagcagcagtaccagcagcagatccagatccagcaccagcagcagcaacagcaacagcagcaacaacaacaaggCCTCTGCAGGCCTCTATTACCCCCTCCTCCCCCACCTGCCCCCGCCCCCTTACTGCTGGATTCAGCAGCCTTGCCTCCAGTCCCGCTCTACAGACTTCGCCGCTTCCCCTGCGGCAACATCGGCTATGGATACCAGGAGCAAGGCCTGCCCCTGGAGCCCCCCATGCCCCTGTCCATGTCCGTACCGGGGCCGCAGGTCATCGGTGGCCAGCCGCCACCCCCTCCCCCCGGCCAACACCCCCAGCTCCCCGGCCAGCAGAGACCGATCTCGCTGGCTCGGCCCGGCGGCCCGGAGGACAGCCGCTCCCTGCTGGTGACCATGGGGACAGTGCAGGACTCCAGACTCCCAAAAATGGAAGGGCACAACGCCACAGTGCTTTAACCCCCTCTCCCTCAGTGCCCACTCGAGAAAACACTGTGCCATCCTGTCTGTGCCCACCTCAGCTCACCGCCATGCTTTTCAGCCACGGCAACGTTATCCCCTTCCCTCACTATGATGTCCGGGATCGACCCTGACTGTTTTATTATCCTATCGTCCTCAGCAGAGGCGCTCAGCGCTGGGTAAAGCTTTACATGAAGCGAGGCGAGATCAGCAttcggggaaaaaaaacactttacgtGAAGACTGCAGgacatttactgtatgtaacTTACTGTTACTAAGCTCATGCTTAGTACCTGAGTGAAACCGTAACTGTGGAATAGCATCATACGGTGAAACAAGgcttcagcagccagagtcagagagagccaTATATTaaattggccttgctcactTTACTAGTGCATTACTAGTGCATTGACTGCCTAGTAATTCGTTAATGGTGGCAGTTTCTAAAGAAGTAGTggattactttttaattttttttaacatatcgaAGGAAGCATGCACTTGTTCTTAGTGTCAGAAGCACTGCAATTGATTGACTGCAGGGATTAGGTTAATTGGCTcaaattaaagcaaagaaattaaactgtaaatcaaaataaaagcctttttaTTATAAATGGAAATTGAATGTttcaacaaacaaactaaaacaaggATATTAATCTAtaagtcaaaataaaagcccacTTTTTAATAACTGAAAAAAGGAGGCAACTAAGTGGCCATTTTTTCTTACCCTCTTCTCAGAGGCAggtcataatattttttaactgtaacatCCTGTCTCTTCATTTTAGCAAATCTTATTTTGCATTTGCAATATGCAAACTCTAATATGCTTTCAACCCAACAAATACAAAGGTTAAAACATGTTGAAAACAAACAGAGCACAAACACATTAAGGCTTGTTCCAATTCGCTGTGCAATTATGAAACTATTAAGCGGTTATTAAAATGTCTGAGCTGAAAATAAAGGCTTGTTTTAGAGATGTGCTCAAAAATAAGCAGAAACGCTCTTCCACTCCTGTGGCCATTCAGGTACAacaccattaataaacactgaAGAGCTCACCACTTCAGcttcagagttaaaaaaacaaatatttcagaGAAAAGGaggctatattttatataaggtCTAAATAATGCCCATGGACATCTTTAACTGTTGAGGCGTATTATTATTCAGGTCAATAAtcatatgtttattatattagaaTTACTACACATTTCCCGAAATTTTATTTAACTAATATCTAAAGTATAATTGACAAGCAGCAAACAAGCAGCATAATTTCAGCATAATCTCAGTAAAGTAGAT

Function

NR:

description
PREDICTED: ALK tyrosine kinase receptor-like

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0007165 signal transduction biological_process
GO:0016020 membrane cellular_component
GO:0000166 nucleotide binding molecular_function
GO:0004713 protein tyrosine kinase activity molecular_function

KEGG:

id description
K05119 ALK, CD246; anaplastic lymphoma kinase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022673187.1 True 5779 mRNA 0.53 26 32729119 32923000

Neighbor

gene id symbol gene type direction distance location
LOC103038371 NA coding upstream 298854 32427026 ~ 32430265 (+)
LOC103038892 NA coding upstream 303807 32420132 ~ 32425312 (+)
kpna5 kpna5,LOC107552832,LOC107711738,LOC107716841 coding upstream 879655 31835348 ~ 31849464 (+)
rwdd1 rwdd1,LOC107700695,LOC107587776,LOC107552826,LOC107704860 coding upstream 909267 31812267 ~ 31819852 (+)
mms22l mms22l coding upstream 969579 31712784 ~ 31759540 (+)
LOC103035281 NA coding downstream 119845 33042845 ~ 33057697 (+)
c9h2orf71 NA coding downstream 138183 33061183 ~ 33071966 (+)
slc4a1ap NA coding downstream 908270 33831270 ~ 33849509 (+)
babam2 bre,LOC107553730,LOC107656747 coding downstream 1089757 34012757 ~ 34183355 (+)
fosl2 fosl2,LOC107656746,LOC107726077,LOC107553732 coding downstream 1289417 34212417 ~ 34226780 (+)
G85438 NA non-coding upstream 183734 32545112 ~ 32545385 (+)
G85418 NA non-coding upstream 236680 32492160 ~ 32492439 (+)
G85377 NA non-coding upstream 239206 32452690 ~ 32489913 (+)
G85371 NA non-coding upstream 260026 32444931 ~ 32469093 (+)
G85360 akirin1,LOC107700743,LOC107730931,LOC107704951 non-coding upstream 337707 32375381 ~ 32391412 (+)
G85442 NA non-coding downstream 56 32923056 ~ 32925758 (+)
G85461 clip4,LOC107676112,LOC107731604 non-coding downstream 12238 32935238 ~ 32938633 (+)
G85486 NA non-coding downstream 121771 33044771 ~ 33045175 (+)
G85502 NA non-coding downstream 190197 33113197 ~ 33113650 (+)
G85515 NA non-coding downstream 386566 33309566 ~ 33357314 (+)
LOC103037843 pnrc2,LOC108441235 other upstream 287801 32436217 ~ 32441318 (+)
LOC103035447 vegfa,vegf,LOC106584182 other upstream 510357 32199183 ~ 32218762 (+)
G85189 NA other upstream 904731 31823586 ~ 31824388 (+)
LOC103034273 LOC103034273,LOC108415529 other upstream 923716 31749703 ~ 31805403 (+)
pnisr pnisr,LOC102782257 other upstream 1259563 31454984 ~ 31469556 (+)
G85740 zdhhc14 other downstream 1823814 34746814 ~ 34800377 (+)
tfb1m tfb1m,cldn20,LOC101886267,LOC107571061,LOC107675320,LOC107573130,LOC107728965,LOC108443299 other downstream 2365215 35288215 ~ 35339832 (+)
LOC111193254 NA other downstream 2713810 35636810 ~ 35658087 (+)
LOC111193255 NA other downstream 4561021 37484021 ~ 37503882 (+)
bcl11b bcl11b,bcl11ba,LOC108270293,LOC107588284 other downstream 4906755 37829755 ~ 37933289 (+)

Expression


Co-expression Network