babam2 (bre,LOC107553730,LOC107656747)


Basic Information

Item Value
gene id babam2
gene name bre,LOC107553730,LOC107656747
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 34012757 ~ 34183355 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022673193.1
TTATTGTAGACAGCCCGTTCGCAGAAGGACCCCAAACAAACAGCAGTGCAGGAAGAGAAGAGCATCAGCTGAGAAACAGCAGCGAGTTTTCCTGATaaagCAGAAGATGAACAGTCTTTCTCCAGAAGTGGCACTGAGCCGGATCTCTCCTGAGCTGCGGCCTTTACTCTGCAGTGTTGTTCGCAATGGCCGTGTTGGGTTGGACTCCACCAACTGCCTGAGGATAACTGATCTTAAGACTGGTTGCACATCACTGACGCCAGGACCCTGCTGTGACCGATTTAAACTGCACATCCCGTACGCTGGAGAAACTCTCAAATGGGACATCATCTTTAATGCCAGAGACCCAGAGCTGCCTCCTGACTTCATTTTCGGGGAGGATGCGGAGTTCCTGCCAGAGCCGTCTGAGCTACCGCACCTGGTGGCCTGGGATGCTGGAGACCCTGACTGCCTCCTGCAGCTGGTGAAGGAGCTCCTGCAGCAGTACCACCAGTACCAGTGCCAGAGGCTGAGGGACAGCTCACGCCTGCTGTTTGAGTATGACAGCCTGCTGGAGGACCCCAACTACGGCCGCAGCATGGAAATCTACGCCGGACGCAAGAACAGCTGGACAGGGGAGTTCTCGGCTCGCTTCCTGCTCAAACTCCCTGTGGACTTCAGCAACATTCCCATCTATCTGCTCAAGGATACAGCTCTGGACCCTGGAGAAGATGTGGCTCTGCTGTCCGTTAGCTTTGAGGATGCTGAAGCCACTCAGGTCTTCCCCAAACTCTTCTTATCGCCAAGTATAGAACATGCCCTTGGAGGGCCCTCAGCCTTGCATATTCCAGCCTTTCCGAGTGGAGGCTGCCTCATTGACTACGTGCCGCAAGTGTGCCAGTTACTcacaaataagGTGCAGTATGTTATTCAAGGCTACCACAAGAGGAGAGAATACATTGCTGCCTTTCTCAGCCATTTTGGAATggGGGTTGTTGAATATGATGCTGTAGGCTTTACTAAGCTCACTCTTCTGCTCATGTGGAAAGACTTCTGTTTCCTGGTTCATGTGGACCTGCCTCTGTACTTTCCCCGAGACCAGCCCACACTGACCTTCCAGTCCATCTACCATTTTACCAGCAGTGGACAGCTTTACTCCCAGGTTCAGAAGTCCTACCCCTACAGCCCACGCTGGGACGGCAATGAGATGGCCAAGAGAGCCAAAGCCTACTTCAAGAGTTTTATCCCTCAGTTTCAGGAGGGAGCCTTTGCCAATGGAAAACTATGAAATTGAACAAAACAGAGGAAATGACTGCAACGAAAACAAATAGCTGCTCAAACCAGTGCTGAAGAGATGACCGTGAACGAGGACACACAATGAAGAGAATGTAATTTACTGTCCTTCATGTTCGAGTTACCACCACGGCCGCTCTATTTACTGTTCAGCACTGCAGAGTCTAAACGGAGCTCTGTTTACTAAACAGACTCAGGTGAACTATTGGGAAACTGCGGTGTCACTAATGTACTGTTCCTTATTACTCCAACAACTCGGTGGTAGAagcttctgtttttcttttatgttcaagtgtgtgtaaaaaaaaaaagtgtttaaatgtaattttttttttattagcatcTCTCAATGTTTTTGCACCATGTCTGTTCTCCTCGTTTGAGAGAGatagaataaatacatttacctctCTTA
>XM_022673194.1
AGGCATTATTGTAGACAGCCCGTTCGCAGAAGGACCCCAAACAAACAGCAGTGCAGGAAGAGAAGAGCATCAGCTGAGAAACAGCAGCGAGTTTTCCTGATaaagAAGATGAACAGTCTTTCTCCAGAAGTGGCACTGAGCCGGATCTCTCCTGAGCTGCGGCCTTTACTCTGCAGTGTTGTTCGCAATGGCCGTGTTGGGTTGGACTCCACCAACTGCCTGAGGATAACTGATCTTAAGACTGGTTGCACATCACTGACGCCAGGACCCTGCTGTGACCGATTTAAACTGCACATCCCGTACGCTGGAGAAACTCTCAAATGGGACATCATCTTTAATGCCAGAGACCCAGAGCTGCCTCCTGACTTCATTTTCGGGGAGGATGCGGAGTTCCTGCCAGAGCCGTCTGAGCTACCGCACCTGGTGGCCTGGGATGCTGGAGACCCTGACTGCCTCCTGCAGCTGGTGAAGGAGCTCCTGCAGCAGTACCACCAGTACCAGTGCCAGAGGCTGAGGGACAGCTCACGCCTGCTGTTTGAGTATGACAGCCTGCTGGAGGACCCCAACTACGGCCGCAGCATGGAAATCTACGCCGGACGCAAGAACAGCTGGACAGGGGAGTTCTCGGCTCGCTTCCTGCTCAAACTCCCTGTGGACTTCAGCAACATTCCCATCTATCTGCTCAAGGATACAGCTCTGGACCCTGGAGAAGATGTGGCTCTGCTGTCCGTTAGCTTTGAGGATGCTGAAGCCACTCAGGTCTTCCCCAAACTCTTCTTATCGCCAAGTATAGAACATGCCCTTGGAGGGCCCTCAGCCTTGCATATTCCAGCCTTTCCGAGTGGAGGCTGCCTCATTGACTACGTGCCGCAAGTGTGCCAGTTACTcacaaataagGTGCAGTATGTTATTCAAGGCTACCACAAGAGGAGAGAATACATTGCTGCCTTTCTCAGCCATTTTGGAATggGGGTTGTTGAATATGATGCTGTAGGCTTTACTAAGCTCACTCTTCTGCTCATGTGGAAAGACTTCTGTTTCCTGGTTCATGTGGACCTGCCTCTGTACTTTCCCCGAGACCAGCCCACACTGACCTTCCAGTCCATCTACCATTTTACCAGCAGTGGACAGCTTTACTCCCAGGTTCAGAAGTCCTACCCCTACAGCCCACGCTGGGACGGCAATGAGATGGCCAAGAGAGCCAAAGCCTACTTCAAGAGTTTTATCCCTCAGTTTCAGGAGGGAGCCTTTGCCAATGGAAAACTATGAAATTGAACAAAACAGAGGAAATGACTGCAACGAAAACAAATAGCTGCTCAAACCAGTGCTGAAGAGATGACCGTGAACGAGGACACACAATGAAGAGAATGTAATTTACTGTCCTTCATGTTCGAGTTACCACCACGGCCGCTCTATTTACTGTTCAGCACTGCAGAGTCTAAACGGAGCTCTGTTTACTAAACAGACTCAGGTGAACTATTGGGAAACTGCGGTGTCACTAATGTACTGTTCCTTATTACTCCAACAACTCGGTGGTAGAagcttctgtttttcttttatgttcaagtgtgtgtaaaaaaaaaaagtgtttaaatgtaattttttttttattagcatcTCTCAATGTTTTTGCACCATGTCTGTTCTCCTCGTTTGAGAGAGatagaataaatacatttacctctCTTA

Function

symbol description
bre BRCA1-A complex subunit BRE

NR:

description
BRCA1-A complex subunit BRE

GO:

id name namespace
GO:0006302 double-strand break repair biological_process
GO:0045739 positive regulation of DNA repair biological_process
GO:0006915 apoptotic process biological_process
GO:0031572 G2 DNA damage checkpoint biological_process
GO:0010212 response to ionizing radiation biological_process
GO:0070531 BRCA1-A complex cellular_component
GO:0070552 BRISC complex cellular_component
GO:0005737 cytoplasm cellular_component
GO:0031593 polyubiquitin modification-dependent protein binding molecular_function

KEGG:

id description
K12173 BRE, BRCC45; BRCA1-A complex subunit BRE

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022673193.1 False 1687 mRNA 0.49 12 34012762 34183355
XM_022673194.1 True 1689 mRNA 0.49 12 34012757 34183355

Neighbor

gene id symbol gene type direction distance location
slc4a1ap NA coding upstream 163248 33831270 ~ 33849509 (+)
c9h2orf71 NA coding upstream 940791 33061183 ~ 33071966 (+)
LOC103035281 NA coding upstream 955060 33042845 ~ 33057697 (+)
LOC103035585 LOC108423467 coding upstream 1089757 32729119 ~ 32923000 (+)
LOC103038371 NA coding upstream 1582492 32427026 ~ 32430265 (+)
fosl2 fosl2,LOC107656746,LOC107726077,LOC107553732 coding downstream 29062 34212417 ~ 34226780 (+)
mocs1 mocs1,LOC107656745 coding downstream 59764 34243119 ~ 34264685 (+)
LOC111193251 NA coding downstream 115368 34298723 ~ 34301134 (+)
kif6 kif6 coding downstream 310470 34493825 ~ 34633946 (+)
LOC103040539 LOC103040539,LOC108423401,LOC108270190 coding downstream 454484 34637839 ~ 34643223 (+)
G85591 NA non-coding upstream 59384 33854317 ~ 33953373 (+)
G85602 NA non-coding upstream 63491 33946197 ~ 33949266 (+)
LOC111193250 NA non-coding upstream 83632 33926162 ~ 33929125 (+)
G85596 NA non-coding upstream 121175 33891012 ~ 33891582 (+)
G85588 NA non-coding upstream 160369 33852188 ~ 33852388 (+)
LOC111193252 NA non-coding downstream 88577 34271932 ~ 34319416 (+)
G85700 NA non-coding downstream 300224 34483579 ~ 34517443 (+)
G85710 NA non-coding downstream 392492 34575847 ~ 34576218 (+)
G85709 NA non-coding downstream 453151 34636506 ~ 34637200 (+)
G85834 NA non-coding downstream 1012561 35195916 ~ 35196276 (+)
LOC103037843 pnrc2,LOC108441235 other upstream 1571439 32436217 ~ 32441318 (+)
LOC103035447 vegfa,vegf,LOC106584182 other upstream 1793995 32199183 ~ 32218762 (+)
G85189 NA other upstream 2188369 31823586 ~ 31824388 (+)
LOC103034273 LOC103034273,LOC108415529 other upstream 2207354 31749703 ~ 31805403 (+)
pnisr pnisr,LOC102782257 other upstream 2543201 31454984 ~ 31469556 (+)
G85740 zdhhc14 other downstream 563459 34746814 ~ 34800377 (+)
tfb1m tfb1m,cldn20,LOC101886267,LOC107571061,LOC107675320,LOC107573130,LOC107728965,LOC108443299 other downstream 1104860 35288215 ~ 35339832 (+)
LOC111193254 NA other downstream 1453455 35636810 ~ 35658087 (+)
LOC111193255 NA other downstream 3300666 37484021 ~ 37503882 (+)
bcl11b bcl11b,bcl11ba,LOC108270293,LOC107588284 other downstream 3646400 37829755 ~ 37933289 (+)

Expression


Co-expression Network