LOC111193251


Basic Information

Item Value
gene id LOC111193251
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 34298723 ~ 34301134 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022673202.1
TTTCTCTCCGAAAAGCTAAGAGAGGTGGTGGAGGAATGGAAATTGGAGAGGGACAACGGCACCATCCCTGTCACGACTGACAATGCCAAGAACATAGTGAATGCAGTAGGTTTGACGGAGGGACTTGGGCCACAGATATCCTGCTTTGCTCACACAGTCAACCTGGCAGCCAAAAGCGCCATCTCTACAGCCCAAATCTCACGACTGCTGGCGAAGGTCAGAAAGGTGGTCACCTTTTTCCATCGAAGCACAACAGCCGCCTTCATCTTGAAAACAAAGCAGGACATGCTGACACTGCCAGACCACAAGTTAATTCACGACGTGCCAACGCGCTGGAACTCCACATACGATATGTTAAAGCGCTATGTGGAGCAAAAGGCGGCCCTCTATTCCACGGTGACggacaaaaatatgaaaaaaaaaaagccaaggaCATTTCCCTGTTAACCGACAGTGAAACAAAGCTGACAGAGGGCCTCATTGATGTTCTTAAACCTTTGAAGAATGTGACTACCCTGATGAGCACAGAAACATCTCCCTCTGTCTCAATGATTATGCCACTGCAGAGGATGGTACTGAAAGCAATGGAACCAAGTGCAGACGACAGTTCCACCATCAAAGATGCCAAGGCAGCCATCACCAAGGATCTTCAAAGCAGATACAGTGACCATAGTATTCAGGATTATCTGCACAGAGCCACAGCACTGGATCCCAGGTTCAAGTCCTTGCCTTATCTGGATGAAGCCTGCGTTCAGAAAATCTGGGATGATCTCACATTGGAAATTGTAAACCTCGAAGAGCAGGCTCAACAACACTGTGAAGCTCAGGCAGCCAGTTCATCCTCAGCAGCGGAATCTGAGCCGTCAGAGACCTCTCCTCCCCCCAAGAAATCTGCCATGGCAACagtttttgctgatttttttacAACAGAGGCAAGAAGTACAAAGCCTTTGCCAGAAACCATTCGTGAAGAGGTCACCTCATACAAGGAAACAAGCTGCATTTCTGTGGATGAAGATCCCCTCGCATGGTGGAAAACCAACGCACATAAGTATCCCCATGTAGCAAAGTTGGCACAACGTGACCTGGCTGTCCCAGGTACATCTGTGCCAAGTGAGCGTGTTTTTTCCACAGCAGGGGACATTGTCACTGCAAGTAGGTCTCGCCTCTTGCCAGAAAATGTTGACAAACTGATTTTCATGCAGAAGAATATGAGAATTGAGTGAAAGGGGGAGGGCTGTTttaaacagtgcagtgcagtgcagtgcagggttttattgcaatatttacactgatggtgtctgtgtgtttttgttctaAGTTGTTTTAATACAACAATGGCactttaagtttaggttataaAAATCCAGCCATATGTTTCAAAGCACTGCACTTTAATTTcaagtggaaaaaaatacatcctTACTCTCAGGGATTAGAAGAGTTGttgattttgttttctgttgagCTGGTTGGATGGTGGGCTCATATTATGTTTCAATTTCTATTCTGTGATATTGAAAAAGGTTCCTGTAGATGGATGTCACCAGATGGCAGCACACATTCCTGACACTTTTTTTtgagtaataaatgtaaaacatgttgAAATCATCCATGTCTTCCCTCTTGTTCTATCAAAATACTATCTTTCTGAGATTGTTAAAACAGCGTGCTTTGAGTTAATTGAAACTCAAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022673202.1 True 1695 mRNA 0.44 2 34298723 34301134

Neighbor

gene id symbol gene type direction distance location
mocs1 mocs1,LOC107656745 coding upstream 34038 34243119 ~ 34264685 (+)
fosl2 fosl2,LOC107656746,LOC107726077,LOC107553732 coding upstream 71943 34212417 ~ 34226780 (+)
babam2 bre,LOC107553730,LOC107656747 coding upstream 115368 34012757 ~ 34183355 (+)
slc4a1ap NA coding upstream 449214 33831270 ~ 33849509 (+)
c9h2orf71 NA coding upstream 1226757 33061183 ~ 33071966 (+)
kif6 kif6 coding downstream 192691 34493825 ~ 34633946 (+)
LOC103040539 LOC103040539,LOC108423401,LOC108270190 coding downstream 336705 34637839 ~ 34643223 (+)
LOC103040842 LOC103040842,LOC108423400 coding downstream 346930 34648064 ~ 34660780 (+)
kcnk5 kcnk5 coding downstream 403904 34705038 ~ 34735575 (+)
LOC103028138 gnmt,LOC107748599,LOC107566124,LOC107706413,LOC107553737 coding downstream 465928 34767062 ~ 34786115 (+)
G85591 NA non-coding upstream 345350 33854317 ~ 33953373 (+)
G85602 NA non-coding upstream 349457 33946197 ~ 33949266 (+)
LOC111193250 NA non-coding upstream 369598 33926162 ~ 33929125 (+)
G85596 NA non-coding upstream 407141 33891012 ~ 33891582 (+)
G85588 NA non-coding upstream 446335 33852188 ~ 33852388 (+)
G85700 NA non-coding downstream 182445 34483579 ~ 34517443 (+)
G85710 NA non-coding downstream 274713 34575847 ~ 34576218 (+)
G85709 NA non-coding downstream 335372 34636506 ~ 34637200 (+)
G85834 NA non-coding downstream 894782 35195916 ~ 35196276 (+)
G85835 NA non-coding downstream 910473 35211607 ~ 35218417 (+)
LOC103037843 pnrc2,LOC108441235 other upstream 1857405 32436217 ~ 32441318 (+)
LOC103035447 vegfa,vegf,LOC106584182 other upstream 2079961 32199183 ~ 32218762 (+)
G85189 NA other upstream 2474335 31823586 ~ 31824388 (+)
LOC103034273 LOC103034273,LOC108415529 other upstream 2493320 31749703 ~ 31805403 (+)
pnisr pnisr,LOC102782257 other upstream 2829167 31454984 ~ 31469556 (+)
G85740 zdhhc14 other downstream 445680 34746814 ~ 34800377 (+)
tfb1m tfb1m,cldn20,LOC101886267,LOC107571061,LOC107675320,LOC107573130,LOC107728965,LOC108443299 other downstream 987081 35288215 ~ 35339832 (+)
LOC111193254 NA other downstream 1335676 35636810 ~ 35658087 (+)
LOC111193255 NA other downstream 3182887 37484021 ~ 37503882 (+)
bcl11b bcl11b,bcl11ba,LOC108270293,LOC107588284 other downstream 3528621 37829755 ~ 37933289 (+)

Expression


Co-expression Network