LOC103028138 (gnmt,LOC107748599,LOC107566124,LOC107706413,LOC107553737)


Basic Information

Item Value
gene id LOC103028138
gene name gnmt,LOC107748599,LOC107566124,LOC107706413,LOC107553737
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 34767062 ~ 34786115 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022673203.1
GAAAACAAGCAGACAGTTAGACAGACAAGCAGACAGTTAGACAGACAAGCAGACAGTTAGATAGACAAGCAGACAGTTAGATAGACAAGCAGACAGTTAGACAGACAAGCAGACAGTTAGATAGACAAGCAGACAGTTAGATAGACAAGCAGACAGTTAGACAGACAAGCAGACAGTTAGATAGACAAGCAGACAGTTAGATAGACAAGCAGACAGTTAGATAGACAAGCAGACAGCGAAAGAGACaaacagggagagagacagacagagagagacagacagagagagagagagagagagagagagagagaaacaagcaGAGAGTGAGACAGCTACAGGCGCGCGAGCATGGTGGACAGCGTGTACCGGACCCGCTCTGGAGTGGCGGCGGTGGGGCTGCCGGATCAGTACGCGGACGGGAAGGCGGCTAAAGTGTGGCAGCTGTATATCGGGGACACGCGGCGGAGGACGGACGAGTACCGGAGCTGGCTCGCGGGGCTGCTCAGACAGCACAACTGCATCCGGGTACTGGACGTAGCCTGCGGCACTGGAGTGGATTCCATCATGCTGGTGGAGGAGGGATTTAAGATGTTCAGCGTGGACGCCAGTGACAAGATGCTGAAATACGCTCTTAAAGAGAGATGGGAGAGGAGGAAAGAGCCAGCTTTCGACCAGTGGGTCATTGAAGAGGCTAACTGGCTCACACTATCAGAAGATGTTCAGAAGCCTGGAGATGGATTTGATGCTGTTATCTGCCTGGGGAACTCATTCGCTCATTTACCAGACTTTAAAGGGGATCAGAGTGATCAGAAGCTGGCTCTGTGCAACATCGCCAGCATGGTGAAACCTGGAGGAATTCTCATCATCGATCACCGCAACTACGACTATATCCTCGAGACAGGCCGAGCTCCAGAAGGGAAGAATATTTATTATCAGAGTGACCTGAAACAAGACATCTCCACATCAGTGCTTTGGGTTAACAGCAAGCCCCACATGGTCACGCTGGACTATTCACTAGAGGTCCCGCAGGCAGAGGGAGCACACACACCACCTGAAACCAGtaAATTCCGTTTGTCGTATTACCCCCACCAGCTGGAGAGCTTCAAGGAGCTCCTGAAGGAAGCGTTCCTGGGAAAATGTGAGCAGAGCGTATTCGGTGACTTTAAGCAGCACAAGCCTGGCCAGGGAGATGCTCCTCGCTACTTTATCCACGTCGTTAAAAAGTCtgcttaaaaacttttttttcccttttctttccGTTTATTTTGATGCTGTTGTCTTATTTCTGTGGTGCTTTTCTTCCTTATTTGCTGCTGTTCTCCACTCTCAAAgccttaaaaacttaaaaagttgAGGCAGAAGACTGACTTAAAGAATTCTGCTGCTCCAGATTTCACATGGGAACCCAAACAGTGCTGGGGTTAAATTATCATATGCTGGGAGATAACAGGGAGCAAATGCTCCTGTATGTGTTTGTGCTACTGAATGATGGGTTTTGACCTCACAAATCCAAATTAAActaatcaaatatttattacTAAGGCCATAGTACACAGACACGCTGTATGCCCCGAAGTTTATGGACACCCCACCTAATGAATGACTCATTCAGCTGCTTTACATTGCACCCACTGCAGTTATGAGCTATTTAGACAGTTTAAAACCCAAGAACTGAGCTGTAGAGCAGAGGAATTAAGGAGGAATTAATTCTCTGGAATGTTGATGCTCCTTCTTATACATTTAGGAGATTtaaaagcaagataaactctttttttaacatccaaTACAGTACAAAACAATAACTGAGCAGGTgtctatacagtatatatagtgtTTATGACCTGTTAAGCCAACTCTTCTTGGAATGCCAACCCTAAGCCTTGAACTAAACTGGTATAGTGCCTTAATTCTACATGCATTCATGCATAAATGTGCAATCTTGTATTCCTTAAACCTCTAAAACTATGTGCCTTCAACTATAACTGTTAGACAGGAGGTATAAATCCagtaaataatttgtttttcatGCTTTGTAAGCTAGAACATTTCAAAAAATTCAATTTAGTGCAGTCTCTAATGCATTTGAAAGCCAGAAAGCCTGTAGAAAGACCTGGGCTGTCTGATCTTATCCCTAACGGGCAGTGTGACTGCAGGTTTTAATTCCAGCAAAGCAGAAGCACATCTCATCAGATGTTTAAAGTCTAACTAATGTATTAAACTAGTGGAATCAGGTCTGCTGCTGGTTGTTCAGAATGAAAACCTGTAGCCACACCGGGATTGGACACTCCACAACTTCTTACCCTCTTAACACTTATTGTCCAATTAGCtctaatgtttttaaagagTGTCCAATCGTTTCTGCGCAGCACATCTCATCACAATTGTATAAAGATGGACCAGTTGGTTTTAAACCAGGGGTTCTTAAGTTTTTCCGCAGTGCGACTcctttttagagttcagaaaattGTTGCGATCCCTccctttctaaaaataaatgatgggcaatgtttcttattaaaaaattaaatcttttaaaaataaaaccttacaaaaatatttttttacatgtggATTAGAAGGGATCAGTAACTCCAAGTACTTTTAtcatattttctttgttttcttttgagaCTTCTGATCATTATCTGTTGCATTTCAGATTCTACACACATTAATTAGCATTACTCATCACTTAGGGCCCCATTGGGGGTCACAGTCTCCAGTTTCAGAAACCCTGATGTGTGCTGCTAGCTGTATGCTGATAAGATGCAGAGTAGGACACCCTGGTTTACAATTGTTTGTCCTCATCAGGCCTGTAAATCAGTCCAGCAGGTAAGGTTCTGTGAGATATGTGAGATTATGACAAGTTGGAGAACCTTTTGGCCTACAGATCCACAGTGAGCTCCCAGACTCCTCCTGTTGGACAGACTGTAGATTGTAGATTATAGCAGTGTATGCAGTTGCatcatacagaaatatatagattttattgCATTCTTCACTGAAAACAGTTGTTTTTGCTgagatggttttaatgtttagttGAATGGATTTTAGACTGTTTGTCCAGTCTGTTTGTTTGGCTGGAATAGCAAAGTGCAAAGTTCACAAAGATTTTGTACAATAACTGATTGTCCTTTAGTGACCTATGAtgaaagaatgtaaaaaaacaaggtaCATCATTGCTGTCTCTAAAAATACTTTTggagaaaaaacagcaacattCTGCGTATATAGAAGTGTATGTTTTACAGTCATTTTTATCATACATTTTTGATATGCTGTAAATAACAACCCACATTATTcagattatgttttttttattttgacaatattctacattatagattacttttaaagactttttaaaaactatccaaataaattccaaacttttatatttttgatttcCTGTTTAACACATCCACTCACTGTCTGAAAGGCCTTCTTAAATAACAGATTACTTGAATCAGTTGTgtctaaaatgtcttaaatgtttTCTCCAGTATACATAAGACTTTACTCTGGCCTAGAACTGTTTAACCATCCAAGAAGTTTTTTTAAGCTGTCAAGGTTCCATACAACCCCACTGTCTATTTaataaagaaacataaaaaaaaacaaccttttttatttttaacagtatatgtttatattgcttAATAAACAAGAATCTAGACTGCCATGTGTCAAAACATGCTTCGGCTTTAGgggaaaaatgctaaaataagtAATGTCAGAAGGAAGATCCCAAAGactgcttatttttatttttattgtgactgtttatttttttctgattattttgagaacaaaataaaaacttgtaaataataaactga

Function

symbol description
gnmt Predicted to enable cation binding activity; glycine N-methyltransferase activity; and identical protein binding activity. Predicted to be involved in several processes, including alpha-amino acid metabolic process; protein homotetramerization; and regulation of gluconeogenesis. Predicted to act upstream of or within methylation. Predicted to be active in cytosol. Is expressed in spinal cord. Human ortholog(s) of this gene implicated in glycine N-methyltransferase deficiency. Orthologous to human GNMT (glycine N-methyltransferase).

NR:

description
PREDICTED: glycine N-methyltransferase

GO:

id name namespace
GO:0032259 methylation biological_process
GO:0017174 glycine N-methyltransferase activity molecular_function

KEGG:

id description
K00552 GNMT; glycine N-methyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022673203.1 True 3842 mRNA 0.40 7 34767062 34786115

Neighbor

gene id symbol gene type direction distance location
kcnk5 kcnk5 coding upstream 31487 34705038 ~ 34735575 (+)
LOC103040842 LOC103040842,LOC108423400 coding upstream 106282 34648064 ~ 34660780 (+)
LOC103040539 LOC103040539,LOC108423401,LOC108270190 coding upstream 123839 34637839 ~ 34643223 (+)
kif6 kif6 coding upstream 133116 34493825 ~ 34633946 (+)
LOC111193251 NA coding upstream 465928 34298723 ~ 34301134 (+)
LOC103028446 LOC108423447,LOC108269492 coding downstream 1235 34787350 ~ 34792462 (+)
LOC103041454 NA coding downstream 478818 35264933 ~ 35269468 (+)
LOC103042380 LOC108437745 coding downstream 881585 35667700 ~ 35686642 (+)
LOC103042687 kif13b,LOC107751739,LOC107583481,LOC107755780 coding downstream 1010035 35796150 ~ 35873071 (+)
efcab11 efcab11,LOC107755768,LOC107680765,LOC107588272,LOC107693110 coding downstream 1273735 36059850 ~ 36139729 (+)
G85709 NA non-coding upstream 129862 34636506 ~ 34637200 (+)
G85710 NA non-coding upstream 190844 34575847 ~ 34576218 (+)
G85700 NA non-coding upstream 249619 34483579 ~ 34517443 (+)
LOC111193252 NA non-coding upstream 447646 34271932 ~ 34319416 (+)
G85602 NA non-coding upstream 817796 33946197 ~ 33949266 (+)
G85834 NA non-coding downstream 409801 35195916 ~ 35196276 (+)
G85835 NA non-coding downstream 425492 35211607 ~ 35218417 (+)
G85845 NA non-coding downstream 545119 35331234 ~ 35331537 (+)
G85842 NA non-coding downstream 556242 35342357 ~ 35349126 (+)
LOC111193253 NA non-coding downstream 564712 35350827 ~ 35364586 (+)
LOC103037843 pnrc2,LOC108441235 other upstream 2325744 32436217 ~ 32441318 (+)
LOC103035447 vegfa,vegf,LOC106584182 other upstream 2548300 32199183 ~ 32218762 (+)
G85189 NA other upstream 2942674 31823586 ~ 31824388 (+)
LOC103034273 LOC103034273,LOC108415529 other upstream 2961659 31749703 ~ 31805403 (+)
pnisr pnisr,LOC102782257 other upstream 3297506 31454984 ~ 31469556 (+)
tfb1m tfb1m,cldn20,LOC101886267,LOC107571061,LOC107675320,LOC107573130,LOC107728965,LOC108443299 other downstream 502100 35288215 ~ 35339832 (+)
LOC111193254 NA other downstream 850695 35636810 ~ 35658087 (+)
LOC111193255 NA other downstream 2697906 37484021 ~ 37503882 (+)
bcl11b bcl11b,bcl11ba,LOC108270293,LOC107588284 other downstream 3043640 37829755 ~ 37933289 (+)
G86497 vrk1,LOC106602366 other downstream 3879052 38665167 ~ 38698313 (+)

Expression


Co-expression Network