LOC111193141


Basic Information

Item Value
gene id LOC111193141
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 22393995 ~ 22409035 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XR_002650283.1
GCTAACTGTGTATCCGAGATGAATTAATAGTTGATGTTTAATAGCAGGCGGacggcgctgtgctggttagataagtaggtCATGGGGTTTGATATGATAGGTGGTTTATGGCTTTAGTTCACCCCAGTCTTTAGTTATTTACCGCAAAACACCAGAGTACAGCTAGCGGCTCAGTGCTAGCTAACAGCCGAACTCAGCAATAAGGATTGGAGGGTGTTAGCCTGGATGCTAACTGAATTTATTGAGCTTAATTTATCGGGTGGTGTTTGATATCAGCGTGGTGTCACTGTGCTGGTTGATATGGGAAGTTCTGCTGTTTGAACAGACATCATACACATATCAGACAATTACTCTGGTCTTCAGGTTTGAAGgtgAGAAGAGAACACTGAAGATTCTGCTTTGGATAAGAAGGCCAGACCTCCCTCTGggCTGTAGCTAAGGAGGTGTGCAGGATTTGACGTGCCGATGTCTACTGCTTGACAAACACAGCTTGAGGGGTAAGAGAAAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002650283.1 True 508 lncRNA 0.45 3 22393995 22409035

Neighbor

gene id symbol gene type direction distance location
tmem179 tmem179,LOC107679825,LOC107569011,LOC107732500,LOC107602274,LOC100537383 coding upstream 258698 22130946 ~ 22135297 (+)
LOC103041179 NA coding upstream 265854 22111114 ~ 22128141 (+)
ubr1 ubr1 coding upstream 290344 22081687 ~ 22103651 (+)
exd2 exd2 coding upstream 338584 22047614 ~ 22055411 (+)
numb numb coding upstream 347565 22000613 ~ 22046430 (+)
LOC103037751 arf6,arf6a,arf6.2,ARF6,LOC105893149,LOC106608083 coding downstream 182534 22591569 ~ 22594357 (+)
edrf1 edrf1,LOC107729289 coding downstream 218269 22627304 ~ 22637793 (+)
tonsl tonsl coding downstream 229698 22638733 ~ 22663127 (+)
LOC103036290 psmc1,LOC108443803 coding downstream 277696 22686731 ~ 22692160 (+)
akap6 akap6 coding downstream 302047 22711082 ~ 22844378 (+)
G82493 NA non-coding upstream 25039 22366240 ~ 22368956 (+)
G82487 NA non-coding upstream 37909 22355641 ~ 22356086 (+)
G82476 NA non-coding upstream 108654 22285063 ~ 22285341 (+)
G82465 NA non-coding upstream 159104 22234503 ~ 22234891 (+)
G82438 NA non-coding upstream 252279 22138496 ~ 22141716 (+)
G82515 NA non-coding downstream 140830 22549865 ~ 22551789 (+)
G82579 eapp,LOC107733856,LOC107729290 non-coding downstream 718918 23127953 ~ 23194290 (+)
G82583 NA non-coding downstream 754978 23164013 ~ 23165063 (+)
G82588 NA non-coding downstream 795780 23204815 ~ 23205444 (+)
G82596 NA non-coding downstream 799460 23208495 ~ 23208799 (+)
G82488 NA other upstream 35860 22357644 ~ 22358135 (+)
ralgapa2 ralgapa2,LOC107687934 other upstream 720557 21520907 ~ 21673438 (+)
G81763 NA other upstream 2720357 19673127 ~ 19673638 (+)
G81761 NA other upstream 2727948 19665736 ~ 19666047 (+)
G81704 NA other upstream 3463241 18930238 ~ 18930754 (+)
G82609 baz1a other downstream 821395 23230430 ~ 23231318 (+)
timm9 timm9,LOC107729247,LOC107693171,LOC107689314 other downstream 1466404 23875439 ~ 23877770 (+)
G82811 psma3,LOC107729246,LOC107725600 other downstream 1500647 23909682 ~ 23973975 (+)
G82853 tulp4,LOC108428686,LOC107589648,LOC107734174,LOC107692724,LOC107742753,LOC107653590 other downstream 1730354 24139389 ~ 24142232 (+)
ephx2 ephx2,LOC107733988,LOC107692411,LOC107653762 other downstream 2486859 24895894 ~ 24924815 (+)

Expression


Co-expression Network