LOC111193196


Basic Information

Item Value
gene id LOC111193196
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 11544676 ~ 11546017 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XR_002650326.1
aacggGATTTATATCAGAAGGACTTGAATTTTGAAAACGCAGGGATTTTTCAACAGGGTACACTGGGTAATTTTAGTATAAAGCGGGAGCTCAGCAGTAAATTCTCCCCTTTTCCCTCCACCCTGCTGAGTGAGGCGGAGCTGTGGGGCTAGTGCTGCTACACTGAATGTCTGTTAATACTGTGAAACTCTAATGCAGACAATAAATGAAGATGCAGCATCTGTCTTGGTCCTGTCTTTAACACAACGCAGAGTGAGCGCCGTAACCGGGCGTGTGGTtacatatgtgtatgtgtatgtatgtatttttttttttgtgtgttttgagggtTGTTAGCTATTCCTGATCCACACTCCAGTCCAGAGGTGGCGGTAATGCACCAAATACGCTGGTTTGCCAACCGCCATTAAAcgacaagaagaagaagaagagtgagCGAATGAGGGAGGCATGTGTGGAGCACCTGCTTTTATTGGTGGTGATCCCTGTAGCCATGAGGCTCTAAAATCAAATCAGGGCAGCAGCATGGTGGAATAAGAGCTGGAAGTTTGGTGCTTTTGCGGTGTTTATTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002650326.1 True 572 lncRNA 0.45 3 11544676 11546017

Neighbor

gene id symbol gene type direction distance location
LOC103024809 LOC107689792,LOC105902344 coding upstream 779962 10727848 ~ 10764714 (+)
LOC111193128 NA coding upstream 878002 10664458 ~ 10666674 (+)
LOC103027561 NA coding upstream 1182631 10352414 ~ 10362045 (+)
LOC103026974 NA coding upstream 1207960 10328968 ~ 10336716 (+)
LOC103026492 NA coding upstream 1252383 10282665 ~ 10292293 (+)
LOC103032219 slc18a2,LOC107670861,LOC107744594,LOC107715963,LOC107689804 coding downstream 31222 11577239 ~ 11637984 (+)
pex13 pex13 coding downstream 264216 11810233 ~ 11823175 (+)
kiaa1841 kiaa1841 coding downstream 340219 11886236 ~ 11962874 (+)
LOC103021592 xpo1b,LOC108438731,LOC108269901,LOC107715966,LOC107744605,LOC107583557 coding downstream 456776 12002793 ~ 12040710 (+)
LOC111193190 NA coding downstream 608906 12154923 ~ 12174659 (+)
G79643 NA non-coding upstream 8353 11535792 ~ 11536323 (+)
G79640 NA non-coding upstream 11812 11532334 ~ 11532864 (+)
G79639 NA non-coding upstream 12526 11531898 ~ 11532150 (+)
G79638 NA non-coding upstream 12869 11531557 ~ 11531807 (+)
G79637 LOC100136012 non-coding upstream 17490 11526848 ~ 11527186 (+)
LOC111193197 NA non-coding downstream 263 11546280 ~ 11546774 (+)
G79659 NA non-coding downstream 13763 11559780 ~ 11560109 (+)
G79683 NA non-coding downstream 145799 11691816 ~ 11692164 (+)
G79684 NA non-coding downstream 154663 11700680 ~ 11702374 (+)
G79692 NA non-coding downstream 201027 11747044 ~ 11747579 (+)
fam98a fam98a,LOC107583540,LOC107744493,LOC107670808 other upstream 729762 10801357 ~ 10814914 (+)
LOC103025860 pcgf5b,LOC103025860,LOC108430201,LOC107583544,LOC107553461,LOC107715951,LOC107670868 other upstream 987808 10538079 ~ 10556868 (+)
LOC103029457 LOC108441045 other upstream 1589638 9883006 ~ 9955038 (+)
spata17 NA other upstream 1989951 9495449 ~ 9554725 (+)
G78818 NA other upstream 3006994 8535916 ~ 8537682 (+)
G79654 NA other downstream 8665 11554682 ~ 11555139 (+)
G79717 NA other downstream 355078 11901095 ~ 11905385 (+)
G79761 LOC108438749 other downstream 518827 12064844 ~ 12076211 (+)
LOC103044397 pgrmc2,LOC108438735,LOC107711856,LOC107721516,LOC107654846,LOC107668512 other downstream 677260 12223277 ~ 12279506 (+)
LOC103027475 fmn2a,LOC108431642,LOC107583499,LOC107750852,LOC107668605,LOC105906094 other downstream 2175884 13721901 ~ 13807027 (+)

Expression


Co-expression Network