LOC111193202


Basic Information

Item Value
gene id LOC111193202
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 14963233 ~ 14969945 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XR_002650334.1
CATGACGTGAACTCACGCGTTCAGAGAAAAACTGTAGACCAAACAACTATAAACACGAGCGAGAGACTGATATTAACGATTAGTGAACACCCTCAGCTGTAGCTTCCCTACATTAATTTAGAGAGAACAGGAGGAAGAACAGAATCAGAGCTTTGTTCTGAAgCAGGTCAAAGTCACAGTGTCCACACAGTTCTGTCCATAAATTCCAGCGACATGATGGACTGGGATGGGACTAGGACCTCTGAGACACGCTGGTAGTGATTATGGTTTCACAATGGTAATTCTAAAGACACATTCCACAAGGTGTTTGCCAAACTCTGGTCATTGTTATGCTTCAGAAAGAATCTGGAGGTCTTGCTGGAATATATCCTGAAATCTGGTAGTGATTTAATGTTCTGGAACACTGGCTCAGTTATAAGCCTGCAGAACGCAGTGAGCGagtctgtttttattgttgagGTCACCAGGTTTCTCTCCTCACCTTAGGATTCACTATGAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002650334.1 True 499 lncRNA 0.43 2 14963233 14969945

Neighbor

gene id symbol gene type direction distance location
peli1 peli1,peli1b,LOC107715974,LOC107583279,LOC107654901,LOC107670869,LOC107583565 coding upstream 12154 14892427 ~ 14951079 (+)
LOC103032735 LOC103032735,LOC108431665,LOC108270066,LOC107715976,LOC107583272,LOC107720922,LOC107670885,LOC107583566,LOC107654900 coding upstream 83527 14836482 ~ 14879706 (+)
LOC111193201 NA coding upstream 197210 14763570 ~ 14766023 (+)
entpd6 entpd6 coding upstream 240556 14695593 ~ 14722677 (+)
LOC103027375 LOC108431653 coding upstream 452203 14495258 ~ 14511030 (+)
wdpcp wdpcp coding downstream 54524 15024469 ~ 15152481 (+)
LOC111193204 NA coding downstream 537435 15507380 ~ 15542286 (+)
eno4 NA coding downstream 712428 15682373 ~ 15704118 (+)
pla2g4f NA coding downstream 894538 15864483 ~ 15891088 (+)
kcnk18 NA coding downstream 927579 15897524 ~ 15920726 (+)
G80663 NA non-coding upstream 97870 14822876 ~ 14865363 (+)
G80662 NA non-coding upstream 140985 14821755 ~ 14822248 (+)
G80590 ube2d1a,LOC103029158,LOC108270474,LOC108431657,LOC107717106,LOC107553913,LOC107663272,LOC107733527,LOC105911631,LOC107583697 non-coding upstream 316866 14640117 ~ 14646367 (+)
G80588 bicc1,LOC108431656 non-coding upstream 355703 14593099 ~ 14607530 (+)
G80580 NA non-coding upstream 384169 14577324 ~ 14579064 (+)
G80745 NA non-coding downstream 121247 15091192 ~ 15093209 (+)
G80787 ehbp1 non-coding downstream 284469 15254414 ~ 15259347 (+)
G80864 NA non-coding downstream 628734 15598679 ~ 15620782 (+)
G80867 NA non-coding downstream 653894 15623839 ~ 15624119 (+)
G80868 NA non-coding downstream 661223 15631168 ~ 15631558 (+)
LOC111188193 LOC108431664 other upstream 128154 14806315 ~ 14835079 (+)
LOC111193140 NA other upstream 160201 14788602 ~ 14803032 (+)
LOC103029370 pygb,LOC107553065,LOC107663289,LOC107671137,LOC107717055,LOC107583638 other upstream 164629 14730508 ~ 14798604 (+)
G80648 NA other upstream 234434 14725927 ~ 14728799 (+)
LOC103028846 LOC108431654 other upstream 428310 14513410 ~ 14534923 (+)
LOC111193203 NA other downstream 204590 15174535 ~ 15203787 (+)
G80857 NA other downstream 594042 15563987 ~ 15583331 (+)
cmpk2 cmpk2 other downstream 3057362 18027307 ~ 18037074 (+)
LOC103035760 rtkn2,rtkn2a other downstream 3490178 18460123 ~ 18469635 (+)
LOC103033848 LOC108435752 other downstream 3541677 18511622 ~ 18520947 (+)

Expression


Co-expression Network