LOC111193226


Basic Information

Item Value
gene id LOC111193226
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 24356975 ~ 24367973 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XR_002650357.1
TAAGGATCACCAGCAGACCCGCTAGCACAAAGGTTTCAACCGAGGGCACACCTGCATAGAAAAGATGTATGGAGAAAGGATATCACACTGAGTGCATCCAAATACCAAAGAATTCACAGATATAGCTGGGATTTCCTGGCCTTGGTCTGCAGCCTGGGTGGTGAAGACGTAGGAAATTTCAGTGTGGGATGTGGTCTGCCTGCAGATGGCACACTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002650357.1 True 216 lncRNA 0.49 3 24356975 24367973

Neighbor

gene id symbol gene type direction distance location
LOC103045057 LOC108428617 coding upstream 20746 24317310 ~ 24336229 (+)
trnal-uaa_4 NA coding upstream 46480 24310413 ~ 24310495 (+)
trnal-uaa_3 NA coding upstream 48085 24308808 ~ 24308890 (+)
trnal-uaa_2 NA coding upstream 49542 24307351 ~ 24307433 (+)
trnal-uaa_1 NA coding upstream 50282 24306611 ~ 24306693 (+)
LOC103047809 grm1,LOC108428695,LOC107733655,LOC107692633 coding downstream 15905 24383878 ~ 24403591 (+)
LOC111193225 NA coding downstream 35717 24403690 ~ 24407033 (+)
LOC103021971 stxbp5,LOC108428698 coding downstream 50036 24418009 ~ 24458899 (+)
LOC103022677 LOC108428699 coding downstream 92601 24460574 ~ 24551484 (+)
LOC103024245 LOC108428599,LOC107594136,LOC107693148,LOC107552018 coding downstream 183969 24551942 ~ 24560699 (+)
G83071 NA non-coding upstream 6440 24349441 ~ 24350535 (+)
G83064 NA non-coding upstream 42010 24314715 ~ 24314965 (+)
G82838 NA non-coding upstream 218071 24136576 ~ 24138904 (+)
G82816 NA non-coding upstream 441516 23913129 ~ 23915459 (+)
G82814 NA non-coding upstream 448367 23908338 ~ 23908608 (+)
LOC111193227 NA non-coding downstream 204355 24572328 ~ 24576551 (+)
G83116 NA non-coding downstream 251722 24619695 ~ 24619937 (+)
G83120 lace1,lace1a,LOC108428707,LOC108269919,LOC108239053 non-coding downstream 262900 24630873 ~ 24635198 (+)
G83121 NA non-coding downstream 268633 24636606 ~ 24636882 (+)
G83123 NA non-coding downstream 274419 24642392 ~ 24642655 (+)
G82853 tulp4,LOC108428686,LOC107589648,LOC107734174,LOC107692724,LOC107742753,LOC107653590 other upstream 214743 24139389 ~ 24142232 (+)
G82811 psma3,LOC107729246,LOC107725600 other upstream 383000 23909682 ~ 23973975 (+)
timm9 timm9,LOC107729247,LOC107693171,LOC107689314 other upstream 479205 23875439 ~ 23877770 (+)
G82609 baz1a other upstream 1125657 23230430 ~ 23231318 (+)
G82488 NA other upstream 1998840 22357644 ~ 22358135 (+)
ephx2 ephx2,LOC107733988,LOC107692411,LOC107653762 other downstream 527921 24895894 ~ 24924815 (+)
LOC111193228 NA other downstream 566191 24934164 ~ 24936186 (+)
c9h8orf74 NA other downstream 662024 25029997 ~ 25034121 (+)
supt3h supt3h other downstream 792945 25160918 ~ 25329482 (+)
LOC103033015 LOC108423550,LOC108270308 other downstream 1551584 25919557 ~ 25975283 (+)

Expression


Co-expression Network