LOC111193227


Basic Information

Item Value
gene id LOC111193227
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 24572328 ~ 24576551 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XR_002650358.1
tAGTGTTACTGTGGTGCAGCAGAAGTACTATAAACGAACTTGTTTTATAATGTTTGGAGAAGGTAAAGCAATACAACTGGAGAAAGAGAATAAATTGGTGAAATAGCGCATCCAGTCGAGCTGAGAGAGGATACCAGAGACTCTACTTTGGATTAATTatcatctgaaaaataaaacccGACTACAACTAACGTTAGTTAAAATGCTAACTACttctgctgcatccagcctcGTAACTTTACCTGGATATTACAGATATTaccttatttacagtatttattttaatcatttacacCTGTGAGCGCTTCTAAAACTAGTCTTCAAAACCCCAGAACTATTTTCAATTTCAACAGAAGGACCAAAACAACACAAGACTGTCCCAACAGTAAAGaAGGACTTTTTATGTACTACAATCTTCCTTGGGATTGAATGGGCTGTGGACAGTAAATGAAGGGTCTTGGACCACAGGTTCCTGCTTTATTGAACCTCCTCTTGGGTGCTAAGGACAAAGATAAATCACAGCTATTTACTGCATGGCTTCAGATTGATCACCTGCACTTCATTAAACTTTGATTACTCAGCAGGTTGCTCAAGAAGACTCTTCCTCACCAGCCCCACCGCATCCAGTGCAGTGCCCCAACTCAAAGTAATGCCG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002650358.1 True 655 lncRNA 0.40 3 24572328 24576551

Neighbor

gene id symbol gene type direction distance location
LOC103024245 LOC108428599,LOC107594136,LOC107693148,LOC107552018 coding upstream 11629 24551942 ~ 24560699 (+)
LOC103022677 LOC108428699 coding upstream 20844 24460574 ~ 24551484 (+)
LOC103021971 stxbp5,LOC108428698 coding upstream 113429 24418009 ~ 24458899 (+)
LOC111193225 NA coding upstream 165295 24403690 ~ 24407033 (+)
LOC103047809 grm1,LOC108428695,LOC107733655,LOC107692633 coding upstream 168737 24383878 ~ 24403591 (+)
LOC103025610 zbtb24 coding downstream 339 24576890 ~ 24590451 (+)
LOC103027217 vsnl1b,LOC103027217,LOC107102224,LOC105895729,LOC103379314 coding downstream 67139 24643690 ~ 24656092 (+)
LOC111188244 NA coding downstream 94071 24670622 ~ 24673463 (+)
LOC103027511 NA coding downstream 96889 24673440 ~ 24679240 (+)
ankrd66 ankrd66 coding downstream 105635 24682186 ~ 24685860 (+)
LOC111193226 NA non-coding upstream 204355 24356975 ~ 24367973 (+)
G83071 NA non-coding upstream 221793 24349441 ~ 24350535 (+)
G83064 NA non-coding upstream 257363 24314715 ~ 24314965 (+)
G82838 NA non-coding upstream 433424 24136576 ~ 24138904 (+)
G82816 NA non-coding upstream 656869 23913129 ~ 23915459 (+)
G83116 NA non-coding downstream 43144 24619695 ~ 24619937 (+)
G83120 lace1,lace1a,LOC108428707,LOC108269919,LOC108239053 non-coding downstream 54322 24630873 ~ 24635198 (+)
G83121 NA non-coding downstream 60055 24636606 ~ 24636882 (+)
G83123 NA non-coding downstream 65841 24642392 ~ 24642655 (+)
G83167 NA non-coding downstream 195331 24771882 ~ 24772793 (+)
G82853 tulp4,LOC108428686,LOC107589648,LOC107734174,LOC107692724,LOC107742753,LOC107653590 other upstream 430096 24139389 ~ 24142232 (+)
G82811 psma3,LOC107729246,LOC107725600 other upstream 598353 23909682 ~ 23973975 (+)
timm9 timm9,LOC107729247,LOC107693171,LOC107689314 other upstream 694558 23875439 ~ 23877770 (+)
G82609 baz1a other upstream 1341010 23230430 ~ 23231318 (+)
G82488 NA other upstream 2214193 22357644 ~ 22358135 (+)
ephx2 ephx2,LOC107733988,LOC107692411,LOC107653762 other downstream 319343 24895894 ~ 24924815 (+)
LOC111193228 NA other downstream 357613 24934164 ~ 24936186 (+)
c9h8orf74 NA other downstream 453446 25029997 ~ 25034121 (+)
supt3h supt3h other downstream 584367 25160918 ~ 25329482 (+)
LOC103033015 LOC108423550,LOC108270308 other downstream 1343006 25919557 ~ 25975283 (+)

Expression


Co-expression Network