LOC111193229


Basic Information

Item Value
gene id LOC111193229
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 25984681 ~ 25993012 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XR_002650361.1
tttgtgttttgggGGATTTTGTTGCTGAAGTCTTTTGTTTCTTGAATCTCTGGTTTgtttctgagttttggcacgtttttcgtggatgggcggggcttagaaggaGGCGTTTACCTTGTATTTGGACTGACAGGTGCCCTGAAACCTCGTCTGTGGCTGACCACGCCcacccgccagcttcaagcgttCTTCAGTCATGGCGGAGCGACGGTTTGcagtgaacagcagcagcaggaggtaTTTTTCTTagttaaaactgatataaatgcTGTGTTTAGTCGCTGAGCGGGTCGgagaaatgtattatatattgtatttccCATCTGAGTCAATGTTTCACCTTGTTCAGCTCACTAGAAGCTTAAAACGCTCCTGTTAGCGAGCTGTGCTAAATATTTATGCTAAATGTAGCGAGTTAGCTATAACTTTAGCTTAGCtgcgttagcttagctagttattGTGTTTCTCGGTAAAGTCGAGCGGGGAACTTAGCGGTTAGTTAGTTACTTTATTTGTTAATTAGACTGTTTATTACTTTAGTTAACAGTTCGAATAGTTCAGCGGTCTCTGTGTGAGAAACGCTATAAACGACCGTGGTCTCGTATCTGCACTCAGAATCTGCTCGGTCGCGCTTCTCTACATCTAAACTGTATTTACCTGCGCGTCTAAACCATGCTTAGTTGCATGTATATGGACcagaatttagattttttaaattagaaccATATTAGAACCACAGCACCATAAAATTATATAGAGCATTAATTTTTCATAtccatttttacatatttttataacaCCTTTTTGTAGCCTATGCATAACgtaatgtttgaaaatgtaGTGGAAACAGTActgaaaacagtaaaatagtTTAAGTGCAAGGTCTGTATTTCGAAAATGTTATTGTTCTACAGGTGGATAGTTGTCTTAGTAAGTTGTCTTTATTAGTTGATTAGATCTGGTTAAATTGTGTCTATTGAGCtgaattcttttatttatttaacattttcggTCTTTGCATGAGAAGCACAAGCAGCTTCTCAGTAAGCTCCACTATGCACCTGgctactgtaaaacactgtttaaagtcCAAACTTTGGGTGTAGATGGTGGATTTATCAATTTTCCAAAAGGACTTCGATGTTTAAAAAGTATGTCCGTGTCGAGAATTATCCTCCACTCAAATAACATCTGCAAACTGGTATTCCTGGCAGTTGGCAAAAGCTAACAGATGgtcagtctgtaattatagaagtACACCTACATTATAGAAGTGCACCTATATGACCAGTGAAGTTGATCAAATAGACAGGTAAGTCAAATGACAGGGTATGTGTGATGAAGTGACTTCTTATACATGTAATATAATATCTAAACATTAATAACAAAATTTGGTGGCTTTCTAATTATTGTTCTTATCTTTAAAATGTCTCTTAATTTAAGTACTTAATTTCCCTGGACTCTTTCGGCAGTCTACTGTGGTCAAGCGACGGATTTCGAACCCTAATAAAGTGCCAAATCTTCATCACCCACTGAAGAGCTACACTACATGCAAGCTAGGCTTAGCATACAGTCCTACTATGCATGAGTCCAGAGTGCCGTCCAGGGCCTAGTCAAGATCCTGTTACCAGTGGCCAACCAGTAAAATGTGAGGAGGATTTTCTGGCTGCCGTGTCAAGTGACTTTACCTGTGTGTTTCAAGGGCAACCATATTTCAGCATGGTCTGAAGCAACTCCAGAAAGGCAGCTGAAAACAACTTTCCATGGTGAGGCTGGCATTGATTATAGTGCACTCAGACGATTGCAGGAATAGAACATCTCTTTGAGGATGACAGAAAAGGAAAGTCTCCCAAATACTCACAGAATGATTTGGACAGCAGCAATTTCAAGTATGTATAAATTTTGTCATCTGCATTtgtgtaacattttaaacatataaatgttttaaacttcAGAACAGCTGGGGGATTTTAAAGTTGTGAGCCTTGCTCAGGGTGTACTGGCACCAAGGTTCTTCCAGGAGTGGGGCCTCAACTTTAGATCAACTGTTCAGCTTGATAACATTGCAAGAAATAATGTATATGGACTGACTTCTAGAGAAGCTTTTTAAGCAgtg
>XR_002650362.1
tttgtgttttgggGGATTTTGTTGCTGAAGTCTTTTGTTTCTTGAATCTCTGGTTTgtttctgagttttggcacgtttttcgtggatgggcggggcttagaaggaGGCGTTTACCTTGTATTTGGACTGACAGGTGCCCTGAAACCTCGTCTGTGGCTGACCACGCCcacccgccagcttcaagcgttCTTCAGTCATGGCGGAGCGACGGTTTGcagtgaacagcagcagcaggagTCTACTGTGGTCAAGCGACGGATTTCGAACCCTAATAAAGTGCCAAATCTTCATCACCCACTGAAGAGCTACACTACATGCAAGCTAGGCTTAGCATACAGTCCTACTATGCATGAGTCCAGAGTGCCGTCCAGGGCCTAGTCAAGATCCTGTTACCAGTGGCCAACCAGTAAAATGTGAGGAGGATTTTCTGGCTGCCGTGTCAAGTGACTTTACCTGTGTGTTTCAAGGGCAACCATATTTCAGCATGGTCTGAAGCAACTCCAGAAAGGCAGCTGAAAACAACTTTCCATGGTGAGGCTGGCATTGATTATAGTGCACTCAGACGATTGCAGGAATAGAACATCTCTTTGAGGATGACAGAAAAGGAAAGTCTCCCAAATACTCACAGAATGATTTGGACAGCAGCAATTTCAAGTATGTATAAATTTTGTCATCTGCATTtgtgtaacattttaaacatataaatgttttaaacttcAGAACAGCTGGGGGATTTTAAAGTTGTGAGCCTTGCTCAGGGTGTACTGGCACCAAGGTTCTTCCAGGAGTGGGGCCTCAACTTTAGATCAACTGTTCAGCTTGATAACATTGCAAGAAATAATGTATATGGACTGACTTCTAGAGAAGCTTTTTAAGCAgtg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002650361.1 True 2116 lncRNA 0.39 4 25984681 25993012
XR_002650362.1 False 881 lncRNA 0.45 5 25984681 25993012

Neighbor

gene id symbol gene type direction distance location
LOC103033987 plcb1,LOC103033987,LOC108423552,LOC107663155,LOC107678738 coding upstream 67837 25835140 ~ 25916844 (+)
LOC103021856 bmp2,LOC108414145,LOC108270435 coding upstream 259772 25718474 ~ 25724909 (+)
gdf3 gdf3 coding upstream 267235 25715058 ~ 25717446 (+)
crls1 crls1,LOC107663140,LOC107738554,LOC107678734,LOC103476593 coding upstream 293787 25684805 ~ 25690894 (+)
mcm8 mcm8,LOC107594086,LOC107678783 coding upstream 300843 25667699 ~ 25683838 (+)
LOC103041814 LOC108423416 coding downstream 335789 26328801 ~ 26330956 (+)
LOC103041516 NA coding downstream 338915 26331927 ~ 26335823 (+)
LOC103041211 LOC103041211,LOC108423415 coding downstream 358119 26351131 ~ 26352435 (+)
LOC103030701 NA coding downstream 364767 26357779 ~ 26360746 (+)
ptpn21 ptpn21 coding downstream 408075 26401087 ~ 26420310 (+)
G83522 hao1 non-coding upstream 182229 25798460 ~ 25802452 (+)
G83456 NA non-coding upstream 447411 25517590 ~ 25537270 (+)
G83449 NA non-coding upstream 489021 25495158 ~ 25495660 (+)
G83446 NA non-coding upstream 520428 25463900 ~ 25464253 (+)
G83440 cdc5l,LOC106599718 non-coding upstream 597091 25370251 ~ 25387590 (+)
G83601 NA non-coding downstream 241904 26234916 ~ 26235175 (+)
G83649 NA non-coding downstream 317697 26310709 ~ 26310948 (+)
G83661 NA non-coding downstream 346170 26339182 ~ 26339699 (+)
G83663 NA non-coding downstream 346819 26339831 ~ 26340272 (+)
G83672 NA non-coding downstream 429502 26422514 ~ 26423061 (+)
LOC103033015 LOC108423550,LOC108270308 other upstream 9398 25919557 ~ 25975283 (+)
supt3h supt3h other upstream 655199 25160918 ~ 25329482 (+)
c9h8orf74 NA other upstream 950560 25029997 ~ 25034121 (+)
LOC111193228 NA other upstream 1048495 24934164 ~ 24936186 (+)
ephx2 ephx2,LOC107733988,LOC107692411,LOC107653762 other upstream 1059866 24895894 ~ 24924815 (+)
G83602 NA other downstream 242486 26235498 ~ 26253602 (+)
c9h14orf132 csgr16h14orf132,LOC108423442,LOC108269530,LOC108413331,LOC107582175 other downstream 281989 26275001 ~ 26305383 (+)
LOC103031022 LOC103031022,LOC108423548 other downstream 328173 26321185 ~ 26327338 (+)
spata7 NA other downstream 399878 26392890 ~ 26399267 (+)
fermt2 fermt2 other downstream 734811 26727823 ~ 26777488 (+)

Expression


Co-expression Network