LOC111193231


Basic Information

Item Value
gene id LOC111193231
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 26507339 ~ 26565844 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XR_002650364.1
GGCATACTGTAGAGGAAGAGGGCCACGATGGCAAGCAGGAGTAAGGCCAGTACGATTTTGATGACCAGCCATTTGTACTGGTTGCAGACAAGAGGGCAGTGGCAGCAGATTATGACTCCCAAGATACTCACATGAAAAGGTAAAGTCTTTGGAAGACAAATGCACACAACAATGAGGTATGTGCCTCTTGCTTTTTGTGCATATGGGATGAACTGGAGGTCACTGGAGTGAGAGCAACTGACCTGAGCTTTGGCTAGCAGGTAATGGGTGTGCATGCATTTGTGGCATGTGTGCAGTGAAGCACTCCTTCAGGAGT
>XR_002650365.1
GGCATACTGTAGAGGAAGAGGGCCACGATGGCAAGCAGGAGTAAGGCCAGTACGATTTTGATGACCAGCCATTTGTACTGGTTGCAGACAAGAGGGCAGTGGCAGCAGATTATGACTCCCAAGATACTCACATGAAAAGGTAAAGTCTTTGGAAGACAAATGCACACAACAATGAGGCACCAAGCAACTTTTTCACCATGTATCCTGGCATGCTGTAAAGGAATAATCCCAGCATTGCCAGCAACAGCAGCACCAC
>XR_002650366.1
GGCATACTGTAGAGGAAGAGGGCCACGATGGCAAGCAGGAGTAAGGCCAGTACGATTTTGATGACCAGCCATTTGTACTGGTTGCAGACAAGAGGGCAGTGGCAGCAGATTATGACTCCCAAGATACTCACATGAAAAGGTAAAGTCTTTGGAAGACAAATGCACACAACAATGAGAGGCTCTGGCTCATTGCGTCCTTCACCAACAGGACTTTTTTCAGCCTCTTCACCTGTCATGAGGTGCAGCTCTGCTTCTACTTTTC
>XR_002650367.1
CTCCTCTCATGTGTTTTTTACCTCTCAAATTTACAGTTCTCCTCGCACGCTATGCAAATTCACTTACCTGCGGCCCCGACTTTTGATATTGATGTGACGCCTTAGTTAAAATTTAGAGTACATTTAGGCTGTAAACCAGCGACTTGGAGCTTCTTGGCCATGTAGCCAGGCATACTGTAGAGGAAGAGGGCCACGATGGCAAGCAGGAGTAAGGCCAGTACGATTTTGATGACCAGCCATTTGTACTGGTTGCAGACAAGAGGGCAGTGGCAGCAGATTATGACTCCCAAGATACTCACATGAAAAGGTAAAGTCTTTGGAAGACAAATGCACACAACAATGAGGTGAGTTTTGTAGAAACAGTCCAGAAATGGTAACAAATGCATGTACAGTGTTTATTCTTTAATGTGTATCACACAAAGCACTCAGTTATTATTGTTGCATGGACAGGCAATACAAATGCAATCCATTTATCTATAAACAATCAAATGACAATGCAAACcttaaattaatacaaaatgtAACATCAACTCGAGTGAAGACAGGCATAGAAGTCAaactgtgttgtttaaatatattcacaaagatggtaaatcctttttttt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002650364.1 False 316 lncRNA 0.48 3 26508611 26565844
XR_002650365.1 False 256 lncRNA 0.48 3 26508611 26511099
XR_002650366.1 False 262 lncRNA 0.48 3 26508611 26513522
XR_002650367.1 True 605 lncRNA 0.39 3 26507339 26509319

Neighbor

gene id symbol gene type direction distance location
snx14 snx14 coding upstream 827 26488033 ~ 26506512 (+)
LOC103026145 LOC108270054,LOC108423543 coding upstream 22717 26474775 ~ 26484622 (+)
LOC103029223 akirin2,LOC100499587,LOC100379102 coding upstream 73147 26425098 ~ 26434192 (+)
ptpn21 ptpn21 coding upstream 87029 26401087 ~ 26420310 (+)
LOC103030701 NA coding upstream 146593 26357779 ~ 26360746 (+)
bmp4 bmp4 coding downstream 38874 26604718 ~ 26613764 (+)
LOC103023862 ddhd1 coding downstream 127574 26693418 ~ 26716015 (+)
stxbp6 stxbp6 coding downstream 229964 26795808 ~ 26897068 (+)
c9h15orf41 cunh15orf41,c9h15orf41,cssa01h15orf41,clg19h15orf41,LOC105897278 coding downstream 862908 27428752 ~ 27506291 (+)
spred1 spred1 coding downstream 1204949 27770793 ~ 27813908 (+)
G83672 NA non-coding upstream 84278 26422514 ~ 26423061 (+)
G83663 NA non-coding upstream 167067 26339831 ~ 26340272 (+)
G83661 NA non-coding upstream 167640 26339182 ~ 26339699 (+)
G83649 NA non-coding upstream 196391 26310709 ~ 26310948 (+)
G83601 NA non-coding upstream 272164 26234916 ~ 26235175 (+)
G83760 NA non-coding downstream 153134 26718978 ~ 26719365 (+)
G83759 NA non-coding downstream 153791 26719635 ~ 26723005 (+)
G83761 NA non-coding downstream 158495 26724339 ~ 26724613 (+)
LOC111193232 NA non-coding downstream 339037 26904881 ~ 26924218 (+)
G83785 NA non-coding downstream 481702 27047546 ~ 27054268 (+)
spata7 NA other upstream 108072 26392890 ~ 26399267 (+)
LOC103031022 LOC103031022,LOC108423548 other upstream 180001 26321185 ~ 26327338 (+)
c9h14orf132 csgr16h14orf132,LOC108423442,LOC108269530,LOC108413331,LOC107582175 other upstream 201956 26275001 ~ 26305383 (+)
G83602 NA other upstream 253737 26235498 ~ 26253602 (+)
LOC103033015 LOC108423550,LOC108270308 other upstream 532056 25919557 ~ 25975283 (+)
fermt2 fermt2 other downstream 161979 26727823 ~ 26777488 (+)
fam98b NA other downstream 1249961 27815805 ~ 27822211 (+)
LOC103044189 LOC108423527,LOC107677688 other downstream 1258412 27824256 ~ 27831584 (+)
LOC107197841 NA other downstream 2404420 28970264 ~ 28970839 (+)
LOC103045392 NA other downstream 2433658 28999502 ~ 29025114 (+)

Expression


Co-expression Network