LOC111193232


Basic Information

Item Value
gene id LOC111193232
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035905.1
NCBI id CM008308.1
chromosome length 42966623
location 26904881 ~ 26924218 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XR_002650368.1
accggaaagcaggaaaaatgagccgaGGATacaatagcagcactactatggagacgaaatgaTTCTGTTCAAAACCAATCggcgtcaagttaaggaaaacgcatcgatacGTAACCCCTCCGTGCTGGGCTTTATCCTGCCTTCACCCCAGCGTCCGCTCCCTTTTCCTGCGAGCACTGCAGCTGAGACCGGCTCTACCCAAAGaaaACGAGGGTCAGGTGAGGAGAAAACTAGTTAAAGTAGGGTGAAAGCAGTTAACGCTGTAAATTTGGAACTGTTGTCTACTGAGAGCTGCTGTGGGTTTATTATTCAGCAAGCCTCGTGTCTGCACTCCGCATATATCCTCGCTGACAGGGAGGAACGCCTGCTCCTGAAAACGGTTCTCACACACTGAGACAAACACTGACAGCCGCTGAAGACTCTGAAGACGTGTCGGAAACTCGGATTGAGCTTTTCTGCTTATAAATTTTGGAGCTTTCCAGGGAAAATAAACTTTTCTGTACAGATAAATGTACCTGCACTGTGACTCTTTGCAGTCACACTGATCCAGTTTGGTTAGGCATCTTCTGGAAAATTACGAGACATAAAATTGTACAAATTGaaatcagaaaaggttgggACAGTGTgggaaaaatgcaaataaataataaaaacattgtttctGAAGATTGTTCTTAATCCCataaactgttttgtttttgtcttatACCCTCAATCTCAGGTTAGAGTCAAGCTTGATCGATTTCAATGCTTCTGTCTgaggtaatgttaattaaaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002650368.1 True 779 lncRNA 0.43 3 26904881 26924218

Neighbor

gene id symbol gene type direction distance location
stxbp6 stxbp6 coding upstream 7813 26795808 ~ 26897068 (+)
LOC103023862 ddhd1 coding upstream 188866 26693418 ~ 26716015 (+)
bmp4 bmp4 coding upstream 291117 26604718 ~ 26613764 (+)
snx14 snx14 coding upstream 398369 26488033 ~ 26506512 (+)
LOC103026145 LOC108270054,LOC108423543 coding upstream 420259 26474775 ~ 26484622 (+)
c9h15orf41 cunh15orf41,c9h15orf41,cssa01h15orf41,clg19h15orf41,LOC105897278 coding downstream 504534 27428752 ~ 27506291 (+)
spred1 spred1 coding downstream 846575 27770793 ~ 27813908 (+)
LOC103043868 atxn3,LOC108423524,LOC106596382,LOC107575702,LOC107683100 coding downstream 924459 27848677 ~ 27855382 (+)
LOC103042318 LOC103042318,LOC108423523 coding downstream 931523 27855741 ~ 27858741 (+)
ddx24 ddx24 coding downstream 935976 27860194 ~ 27869973 (+)
G83761 NA non-coding upstream 180268 26724339 ~ 26724613 (+)
G83759 NA non-coding upstream 181876 26719635 ~ 26723005 (+)
G83760 NA non-coding upstream 185516 26718978 ~ 26719365 (+)
LOC111193231 NA non-coding upstream 339037 26507339 ~ 26565844 (+)
trnay-gua_9 NA non-coding upstream 396756 26508040 ~ 26508125 (+)
G83785 NA non-coding downstream 123328 27047546 ~ 27054268 (+)
LOC111193233 NA non-coding downstream 146487 27070705 ~ 27082187 (+)
G83795 aqr non-coding downstream 162982 27087200 ~ 27100573 (+)
G83805 aqr,LOC108423414 non-coding downstream 209757 27133975 ~ 27140397 (+)
G83824 NA non-coding downstream 319538 27243756 ~ 27244268 (+)
fermt2 fermt2 other upstream 127393 26727823 ~ 26777488 (+)
spata7 NA other upstream 505614 26392890 ~ 26399267 (+)
LOC103031022 LOC103031022,LOC108423548 other upstream 577543 26321185 ~ 26327338 (+)
c9h14orf132 csgr16h14orf132,LOC108423442,LOC108269530,LOC108413331,LOC107582175 other upstream 599498 26275001 ~ 26305383 (+)
G83602 NA other upstream 651279 26235498 ~ 26253602 (+)
fam98b NA other downstream 891587 27815805 ~ 27822211 (+)
LOC103044189 LOC108423527,LOC107677688 other downstream 900038 27824256 ~ 27831584 (+)
LOC107197841 NA other downstream 2046046 28970264 ~ 28970839 (+)
LOC103045392 NA other downstream 2075284 28999502 ~ 29025114 (+)
LOC111193240 NA other downstream 2116761 29040979 ~ 29041607 (+)

Expression


Co-expression Network