LOC103047655


Basic Information

Item Value
gene id LOC103047655
gene name NA
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 40349807 ~ 40352656 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>LOC103047655
ATGATCCTCAACGCCGCCTCGCTTTCTCTGCTCCTGCTGTTCCACATCTCTGGTTTGGAGGCTCTCAAGTTAATTCAGGAGAAAGCGATGTCTGTGAAACTGGCAGAAAACATTAAGATCTCCTGCACAACAGATAGTTCCAGGGGTTATACTTATACATGGTACCAGCAGAAACCTGGCACTGAACTGACTATAgCAAATCGTCCTGCGTCTCCTCCCACTCTGCTCCTGCTGGCTCCGCCCCAGTCCCGCCCCTCCGGCTCGGAGGTCAGTGTGGTGTGTCTGGCTCGGGGTTTTCGTCCTGATGGTGCCGCTCTGTCCTGGGCTGAGGACGGAAGCACCATGGCGGGTCCTGAGGTCCACACAGGCCTGTCCCAACGTCAGCCCGACGGTACCTTCATCCGGAGCAGCGTCCTGAAGCTCAGCCCGGAACGCTGGAGCTCAGGACACACCTACACCTGTCACCTGACCCACCCCGCCCTCTCCAGCCCGCTCAGAGAGAGCGTCAGTGCGGGACAGTGCAGCTAGACGAGGACAGATATCACAGAATGATTGTGTTCAAAGtcgttcattttacttttacttatcTTGGATTTGCTGTAATGTGGCCACTAGAGGCAGTGTAACTCTCTGTACTGTCGTTActaattttgtctttttttttcttttataatcattataaaataaaacattatctgAAAGA
>TU302370
GCTGTGTGTGAATGCTGGGTTTGCTCTGAAAggattttaaagattttgatCTTTTAGAGAAGGAGATCATCATCATGATCCTCAACGCCGCCTCGCTTTCTCTGCTCCTGCTGTTCCACATCTCTGGTTTGGAGGCTCTCAAGTTAATTCAGGAGAAAGCGATGTCTGTGAAACTGGCAGAAAACATTAAGATCTCCTGCACAACAGATAGTTCCAGGGGTTATACTTATACATGGTACCAGCAGAAACCTGGTGAATCTCCAAAGTTCTTACTTCATGGCAGCACAAGAGCGAGTGGACTCGCGAGTCGATTCACTTACAGCGGATCTGGATCACAGATATATCTGAATATCAATGGAGTTGAGGCTGAAGACGAGGCTGTTTATTACTGCGCTTGCCATTACTGGGAAGGCACTGGCACAGTGCTACATCTCAATAAACCCCTCGTACAAAAACCCAACCATCTCTAAACCCTCCTCAAACCTCCCAGCTCCACCAGAGACCCTCACTCAGCCCGCTGTGAGACCCCTCATGAGCTCTGGACCGGATCCAGACCCAGCTGTGGTCATTTAGTCCAGTTTGGAGTGGTGTGGAAGGGGCAGTGGTGATCAGTGAAGTGTTGAGTGTGAGCAGAAGCAGTGTGATGCAGTCTGGAGGTTTTTGTACGGGGCTCTAACACTGTGTGGCATACTCTGCTATTTTTGGTGAAGGCACTGAACTGACTATAgCAAATCGTCCTGCGTCTCCTCCCACTCTGCTCCTGCTGGCTCCGCCCCAGTCCCGCCCCTCCGGCTCGGAGGTCAGTGTGGTGTGTCTGGCTCGGGGTTTTCGTCCTGATGGTGCCGCTCTGTCCTGGGCTGAGGACGGAAGCACCATGGCGGGTCCTGAGGTCCACACAGGCCTGTCCCAACGTCAGCCCGACGGTACCTTCATCCGGAGCAGCGTCCTGAAGCTCAGCCCGGAACGCTGGAGCTCAGGACACACCTACACCTGTCACCTGACCCACCCCGCCCTCTCCAGCCCGCTCAGAGAGAGCGTCAGTGCGGGACAGTGCAGCTAGACGAGGACAGATATCACAGAATGATTGTGTTCAAAGtcgttcattttacttttacttatcTTGGATTTGCTGTAATGTGGCCACTAGAGGCAGTGTAACTCTCTGTACTGTCGTTActaattttgtctttttttttcttttataatcattataaaataaaacattatctgAAAGATCTGGTGAGATCTGGTAagactgtttattttatatttaatactgtATACGGATCAGCAGAGTAAGATGCTGACTTTATGGCCGGAGGATCAACTGTTTCATAtcctggatcatgctgcttctccatcagcagccggagtctgagagagtacagttggccatgctctctcaaCTGCATATACATAATAACAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC103047655 False 703 C_region 0.52 4 40349881 40352465
TU302370 True 1426 TUCP 0.49 3 40349807 40352656

Neighbor

gene id symbol gene type direction distance location
LOC103047342 NA coding upstream 132771 40208406 ~ 40217036 (+)
eif3l eif3l,LOC102789421 coding upstream 142678 40198388 ~ 40207129 (+)
cdh23 cdh23,LOC107679169,LOC107734258,LOC107676383 coding upstream 239132 40086085 ~ 40110675 (+)
gphb5 NA coding upstream 766589 39577772 ~ 39583218 (+)
LOC111196043 NA coding upstream 973169 39373982 ~ 39376638 (+)
LOC103045354 fndc5,LOC108237574,LOC107575402,LOC108238726,LOC106589070,LOC102792536 coding downstream 633518 40986174 ~ 41008038 (+)
LOC111196049 NA coding downstream 736846 41089502 ~ 41098828 (+)
LOC111195996 NA coding downstream 843329 41195985 ~ 41198825 (+)
LOC103044280 NA coding downstream 924329 41276985 ~ 41279078 (+)
LOC103042542 NA coding downstream 935305 41287961 ~ 41294250 (+)
G222884 NA non-coding upstream 6933 40341554 ~ 40342874 (+)
G222868 NA non-coding upstream 36970 40309880 ~ 40312837 (+)
G222869 NA non-coding upstream 40032 40308948 ~ 40309775 (+)
G222850 NA non-coding upstream 108803 40240758 ~ 40241004 (+)
G222819 NA non-coding upstream 236144 40050507 ~ 40113663 (+)
G222887 NA non-coding downstream 47121 40399777 ~ 40400065 (+)
G222888 NA non-coding downstream 68417 40421073 ~ 40421516 (+)
G222890 NA non-coding downstream 131722 40484378 ~ 40484665 (+)
G222891 NA non-coding downstream 139235 40491891 ~ 40512875 (+)
G222894 NA non-coding downstream 168113 40520769 ~ 40520986 (+)
zfyve21 zfyve21 other upstream 10155 40331073 ~ 40339652 (+)
G222694 ppp2r5e,LOC102786035 other upstream 635792 39678502 ~ 39714015 (+)
LOC103047486 LOC108443507 other upstream 1078669 39197707 ~ 39271138 (+)
oip5 NA other upstream 1450974 38894873 ~ 38898833 (+)
LOC103040744 LOC103040744,LOC108439706,LOC108263332 other upstream 1605623 38735939 ~ 38744184 (+)
LOC103045954 ypel5,slc30a10,LOC107568027,LOC108441457,LOC102788175,LOC102210471 other downstream 713002 41065658 ~ 41073316 (+)
LOC103046574 NA other downstream 832305 41184961 ~ 41193209 (+)
gfra1 gfra1a,LOC108442611,LOC107568111,LOC107666504 other downstream 1891155 42243811 ~ 42371581 (+)
G223269 NA other downstream 2810625 43163281 ~ 43166134 (+)
G223335 micu1 other downstream 3258967 43611623 ~ 43615389 (+)

Expression


Co-expression Network