LOC103034491 (scoc,LOC103034491,LOC108434805,LOC107674238,LOC108263532,LOC103132857,LOC103463814,LOC106946201)


Basic Information

Item Value
gene id LOC103034491
gene name scoc,LOC103034491,LOC108434805,LOC107674238,LOC108263532,LOC103132857,LOC103463814,LOC106946201
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 5349167 ~ 5359732 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU290378
TACAGCTGTACACAGAGATGAGGAGCAGTTAGCGCAGTTTCACCATCTCCCAGAGCTGCGGTACCGGCTTTACCACCGCGGTTTAACTCTAAAGACCTCTCCGTTCACTCTGTCCGGCTTTTAACGGTGACAGTCCTGCAGCTCTGCGCTCCAGACAAGAGGACGAATACTTCGCCATGAACTGCGACATGGATGGAGATATTGAGAACCAAGTTGAGCTGGAGGAGAAGACAAGACTCATCAACCAAGTGCTCGAGCTTCAGCACACGCTAGAAGATCTCTCAGCTCGGGTGGATGCGGTGAAAGAAGAGAACCTGAAGCTGAAGTCGGAGAACCAGGTTCTGGGGCAGTACATTGAGAACCTCATGTCTGCCTCCAGTGTGTTCCAGACCACCGACACCAAGAGCAAACGGAAATAAAGTTGGGAAAACGATCCTTCCCCTACCAGAACGGACCCTTTATCCCTTAAAAGGCCAATACACACAAGGCCCAGTTTACTTTTACCCACTAGTGTCCTCCAGTGTTCACCATCACAGCTTCTCACATACTCCTCCCTGCGTGGGATCACTCTCAGCTCtgaatttgtttatattttttacatgtacagtttttttttctctattctttTCCGTTTCATTCCATCCATTATAATACCAGCTGCTTGTGGATGCCATTAAAACAGACtgacctgctctctctctctttctctctggctgTTACGGAGTTAATGGAGGCATTTCGTAGTCTGTGGTCAGATATCCACAGTACTAATGCACATCAGGCTCTATATGCAGCTCTTTTAGTGGCTACGCAGCTCAGCAGACCATCTGCATGCTTCTCCTGCTGGAATAGTGCAGCTTTTTCAAATGGTTTAAAGGAGCCAGCCTAAAGACTAGTGCATTAATGggtaatctttttttattttttattaataaatacttttaccTATTTCACATTTACCATTGAGAAGCAGTGAAACAATGAGGAGAATGGAGCACAGGAGAAACGGTTGGAAGTCTCCAAGCACAGATGGGAGAGATGTTACATGAGGTCCTTTTTATTATTCCAAAGAAAATATGCATGATTTGAGGGCTCGGGTGGGTGAAGATTTTAGAAAGGATTTTAGAAAACTATGCAGTGATCAGTACACTTTTGTGaccttttttattccttttatttatggGTGTTTTTACACCTTTAAGTCTAGACCCAAGTCTGACCCAAGGTCCTTGTGTTACATTGCATTTAATACACATGGtccggttagttttggtttcacactgggTCCTGGCCTCATCACCGAAGTGGGCTGCATCTTCCCATATATGATAATGACTGGTTTGTAGAAGGGAACATGTCTGAGTGTAGGCATGGTATAAAGTCATAAATTTGGCGAGATGCCTTTCCAGATGTTGTGACGAATTCTGCCTACTATCACAATCTGCCTTCCTTCAAATGCACACTCGTAATGCTGTAGGATGATtgtaaaaactgcttttatgtctgattataaataagggttaatctacagttacagtagatacagaaattgGTCAACACCAAATAAGCAGGAGCAAAAATGCCACAGAGTAAAATTTTGGATTTAGTCCAGATCATGTAGTttgaaaacccttttttttttttagatagttCAGACTTTTGAACCAACTACAGGAAGGCTTTCGTCACTTGTTCAAcagtagaagaagaaaagaaactgGTGGTGTGCTGAAATCTGATGCCCGGTCATAAAGCAGTATAGAAACAAGAGATTAGGCTggtgtatctactgtaactgtagattaacccattttttaacaaacaaatacaattaATCCAAAGGGTAATGTTACACTCATTTTGCTGTGTAACGCTTGTGCAATTAAATCTGATTCTGCCAGggaggcagaatttggcacaaaaCATGGAGAGGCAATTTTCAGAATTGACAACGCCCCAACGTCCAATGCATGCTCTTCTGGAAATGTAGAAATCAGTATACCAAATAAGCAGCCCCTATAGGCAGTGATAACCGGATGTTGTGTgaaattgtttatttgcttaCGAAACTACAGTGTGAACAAACACATGAACTTAATTTTTTGACTGGACTTAATGGACAGGTGGAAATGCTACAGTATCAATGGAGGCAAAGGGAACAACATCTTGTAATGCCAGGATGTGTAGTGTTTCAGAAGATGTTTCTTTTAACTGGAATAAGATGGGATTGGAGACAATGAGAAAGAAATGGACTGCCTGGCTTTTACTGTAAAAAGAGAAAGGGACTCTTGAGTGATATTGATCTGGGAGAGTGCTCTGAAGGGTGCATTTGATTTAACCCAATCCCTGCACAAAGCAGAGGCATGAAATTAAggcttgattaaaaaaaattaaaaagttattttagatCTGGTAGTATAGAAATATTTCTATTATATTGCTGATATTTCTATCAGCCAAAGTCTGCACTGCTcaaagacacaaaaaaacaaaagatgtCATATCTCAATAACAATGAGAATGAGCTTAGTTGTTACAAGGGAACGGTCATAAAATGtcataaatgttatttattgttttgttgtgtATTAACATTTTCCTTCAGGTATGTAACTTAAGCCTGCACACATCCAATGTAGATACTGccttgtgtgtaagtgtgtaaaaaatgtactattactactatgCCTTTAACCTTTTTGTGTTAATAAATTGTTTCTGCCTTTGCATTGGT
>TU290380
TACAGCTGTACACAGAGATGAGGAGCAGTTAGCGCAGTTTCACCATCTCCCAGAGCTGCGGTACCGGCTTTACCACCGCGGTTTAACTCTAAAGACCTCTCCGTTCACTCTGTCCGGCTTTTAACGGTGACAGTCCTGCAGCTCTGCGCTCCAGACAAGAGGACGAATACTTCGCCATGAACTGCGACATGGATGATATTGAGAACCAAGTTGAGCTGGAGGAGAAGACAAGACTCATCAACCAAGTGCTCGAGCTTCAGCACACGCTAGAAGATCTCTCAGCTCGGGTGGATGCGGTGAAAGAAGAGAACCTGAAGCTGAAGTCGGAGAACCAGGTTCTGGGGCAGTACATTGAGAACCTCATGTCTGCCTCCAGTGTGTTCCAGACCACCGACACCAAGAGCAAACGGAAATAAAGTTGGGAAAACGATCCTTCCCCTACCAGAACGGACCCTTTATCCCTTAAAAGGCCAATACACACAAGGCCCAGTTTACTTTTACCCACTAGTGTCCTCCAGTGTTCACCATCACAGCTTCTCACATACTCCTCCCTGCGTGGGATCACTCTCAGCTCtgaatttgtttatattttttacatgtacagtttttttttctctattctttTCCGTTTCATTCCATCCATTATAATACCAGCTGCTTGTGGATGCCATTAAAACAGACtgacctgctctctctctctttctctctggctgTTACGGAGTTAATGGAGGCATTTCGTAGTCTGTGGTCAGATATCCACAGTACTAATGCACATCAGGCTCTATATGCAGCTCTTTTAGTGGCTACGCAGCTCAGCAGACCATCTGCATGCTTCTCCTGCTGGAATAGTGCAGCTTTTTCAAATGGTTTAAAGGAGCCAGCCTAAAGACTAGTGCATTAATGggtaatctttttttattttttattaataaatacttttaccTATTTCACATTTACCATTGAGAAGCAGTGAAACAATGAGGAGAATGGAGCACAGGAGAAACGGTTGGAAGTCTCCAAGCACAGATGGGAGAGATGTTACATGAGGTCCTTTTTATTATTCCAAAGAAAATATGCATGATTTGAGGGCTCGGGTGGGTGAAGATTTTAGAAAGGATTTTAGAAAACTATGCAGTGATCAGTACACTTTTGTGaccttttttattccttttatttatggGTGTTTTTACACCTTTAAGTCTAGACCCAAGTCTGACCCAAGGTCCTTGTGTTACATTGCATTTAATACACATGGtccggttagttttggtttcacactgggTCCTGGCCTCATCACCGAAGTGGGCTGCATCTTCCCATATATGATAATGACTGGTTTGTAGAAGGGAACATGTCTGAGTGTAGGCATGGTATAAAGTCATAAATTTGGCGAGATGCCTTTCCAGATGTTGTGACGAATTCTGCCTACTATCACAATCTGCCTTCCTTCAAATGCACACTCGTAATGCTGTAGGATGATtgtaaaaactgcttttatgtctgattataaataagggttaatctacagttacagtagatacagaaattgGTCAACACCAAATAAGCAGGAGCAAAAATGCCACAGAGTAAAATTTTGGATTTAGTCCAGATCATGTAGTttgaaaacccttttttttttttagatagttCAGACTTTTGAACCAACTACAGGAAGGCTTTCGTCACTTGTTCAAcagtagaagaagaaaagaaactgGTGGTGTGCTGAAATCTGATGCCCGGTCATAAAGCAGTATAGAAACAAGAGATTAGGCTggtgtatctactgtaactgtagattaacccattttttaacaaacaaatacaattaATCCAAAGGGTAATGTTACACTCATTTTGCTGTGTAACGCTTGTGCAATTAAATCTGATTCTGCCAGggaggcagaatttggcacaaaaCATGGAGAGGCAATTTTCAGAATTGACAACGCCCCAACGTCCAATGCATGCTCTTCTGGAAATGTAGAAATCAGTATACCAAATAAGCAGCCCCTATAGGCAGTGATAACCGGATGTTGTGTgaaattgtttatttgcttaCGAAACTACAGTGTGAACAAACACATGAACTTAATTTTTTGACTGGACTTAATGGACAGGTGGAAATGCTACAGTATCAATGGAGGCAAAGGGAACAACATCTTGTAATGCCAGGATGTGTAGTGTTTCAGAAGATGTTTCTTTTAACTGGAATAAGATGGGATTGGAGACAATGAGAAAGAAATGGACTGCCTGGCTTTTACTGTAAAAAGAGAAAGGGACTCTTGAGTGATATTGATCTGGGAGAGTGCTCTGAAGGGTGCATTTGATTTAACCCAATCCCTGCACAAAGCAGAGGCATGAAATTAAggcttgattaaaaaaaattaaaaagttattttagatCTGGTAGTATAGAAATATTTCTATTATATTGCTGATATTTCTATCAGCCAAAGTCTGCACTGCTcaaagacacaaaaaaacaaaagatgtCATATCTCAATAACAATGAGAATGAGCTTAGTTGTTACAAGGGAACGGTCATAAAATGtcataaatgttatttattgttttgttgtgtATTAACATTTTCCTTCAGGTATGTAACTTAAGCCTGCACACATCCAATGTAGATACTGccttgtgtgtaagtgtgtaaaaaatgtactattactactatgCCTTTAACCTTTTTGTGTTAATAAATTGTTTCTGCCTTTGCATTGGT
>XM_007253693.3
TGCAGGTGTCTCATACGACTGTAGtgcagtggagagagagagagaccacgaGCGAGAGAcctagagtaaaaaaaaagagagagaaaaaatattgttttattaaaaatacatactgtGATTATACTGTTTCTGGTTTAAGGTGTACAATAATGGAGGCAGAAGTGGACGAAGAAGATGGAACTTTTACGAACATCTCACTGGCTGATGACTCAGGTGACAGTCCTGCAGCTCTGCGCTCCAGACAAGAGGACGAATACTTCGCCATGAACTGCGACATGGATGGAGATATTGAGAACCAAGTTGAGCTGGAGGAGAAGACAAGACTCATCAACCAAGTGCTCGAGCTTCAGCACACGCTAGAAGATCTCTCAGCTCGGGTGGATGCGGTGAAAGAAGAGAACCTGAAGCTGAAGTCGGAGAACCAGGTTCTGGGGCAGTACATTGAGAACCTCATGTCTGCCTCCAGTGTGTTCCAGACCACCGACACCAAGAGCAAACGGAAATAAAGTTGGGAAAACGATCCTTCCCCTACCAGAACGGACCCTTTATCCCTTAAAAGGCCAATACACACAAGGCCCAGTTTACTTTTACCCACTAGTGTCCTCCAGTGTTCACCATCACAGCTTCTCACATACTCCTCCCTGCGTGGGATCACTCTCAGCTCtgaatttgtttatattttttacatgtacagtttttttttctctattctttTCCGTTTCATTCCATCCATTATAATACCAGCTGCTTGTGGATGCCATTAAAACAGACtgacctgc
>XM_007253694.3
CAGCAGCTGCAGGTGTCTCATACGACTGTAGtgcagtggagagagagagagaccacgaGCGAGAGAcctagagtaaaaaaaaagagagagaaaaaatattgttttattaaaaatacatactgtGATTATACTGTTTCTGGTTTAAGGTGTACAATAATGGAGGCAGAAGTGGACGAAGAAGATGGAACTTTTACGAACATCTCACTGGCTGATGACTCAGGTGACAGTCCTGCAGCTCTGCGCTCCAGACAAGAGGACGAATACTTCGCCATGAACTGCGACATGGATGATATTGAGAACCAAGTTGAGCTGGAGGAGAAGACAAGACTCATCAACCAAGTGCTCGAGCTTCAGCACACGCTAGAAGATCTCTCAGCTCGGGTGGATGCGGTGAAAGAAGAGAACCTGAAGCTGAAGTCGGAGAACCAGGTTCTGGGGCAGTACATTGAGAACCTCATGTCTGCCTCCAGTGTGTTCCAGACCACCGACACCAAGAGCAAACGGAAATAAAGTTGGGAAAACGATCCTTCCCCTACCAGAACGGACCCTTTATCCCTTAAAAGGCCAATACACACAAGGCCCAGTTTACTTTTACCCACTAGTGTCCTCCAGTGTTCACCATCACAGCTTCTCACATACTCCTCCCTGCGTGGGATCACTCTCAGCTCtgaatttgtttatattttttacatgtacagtttttttttctctattctttTCCGTTTCATTCCATCCATTATAATACCAGCTGCTTGTGGATGCCATTAAAACAGACtgacctgct
>XM_007253695.3
CGCGGCCGGTCTAACAGCGGCCAAACCCTACAGCTGTACACAGAGATGAGGAGCAGTTAGCGCAGTTTCACCATCTCCCAGAGCTGCGGTACCGGCTTTACCACCGCGGTTTAACTCTAAAGACCTCTCCGTTCACTCTGTCCGGCTTTTAACGGTGACAGTCCTGCAGCTCTGCGCTCCAGACAAGAGGACGAATACTTCGCCATGAACTGCGACATGGATGGAGATATTGAGAACCAAGTTGAGCTGGAGGAGAAGACAAGACTCATCAACCAAGTGCTCGAGCTTCAGCACACGCTAGAAGATCTCTCAGCTCGGGTGGATGCGGTGAAAGAAGAGAACCTGAAGCTGAAGTCGGAGAACCAGGTTCTGGGGCAGTACATTGAGAACCTCATGTCTGCCTCCAGTGTGTTCCAGACCACCGACACCAAGAGCAAACGGAAATAAAGTTGGGAAAACGATCCTTCCCCTACCAGAACGGACCCTTTATCCCTTAAAAGGCCAATACACACAAGGCCCAGTTTACTTTTACCCACTAGTGTCCTCCAGTGTTCACCATCACAGCTTCTCACATACTCCTCCCTGCGTGGGATCACTCTCAGCTCtgaatttgtttatattttttacatgtacagtttttttttctctattctttTCCGTTTCATTCCATCCATTATAATACCAGCTGCTTGTGGATGCCATTAAAACAGACtgacctgct

Function

symbol description
scoc Involved in positive regulation of macroautophagy and regulation of protein complex stability. Located in Golgi apparatus and nucleoplasm. Colocalizes with endosome and trans-Golgi network.

NR:

description
short coiled-coil protein B-like isoform X1

GO:

id name namespace
GO:0005829 cytosol cellular_component
GO:0000139 Golgi membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU290378 True 2734 lncRNA 0.40 4 5353351 5359732
TU290380 False 2731 lncRNA 0.40 4 5353351 5359732
XM_007253693.3 False 779 mRNA 0.45 4 5349174 5357690
XM_007253694.3 False 784 mRNA 0.45 4 5349167 5357691
XM_007253695.3 False 721 mRNA 0.49 4 5353323 5357691

Neighbor

gene id symbol gene type direction distance location
LOC103040975 zgc:56493,LOC103040975,LOC108444223,LOC107674259,LOC107737089,LOC108263754,LOC107671288,LOC107559635,LOC107551115 coding upstream 290468 5051210 ~ 5058699 (+)
LOC103046693 NA coding upstream 301445 5035113 ~ 5047722 (+)
LOC103040673 faah2a,LOC108434801,LOC108263609,LOC107712025 coding upstream 320384 5015309 ~ 5028783 (+)
LOC103040043 NA coding upstream 370564 4967964 ~ 4978603 (+)
fam13a fam13a coding upstream 484356 4737253 ~ 4864811 (+)
LOC103035563 LOC108263533,LOC108434806,LOC107712022,LOC107737080,LOC107671368 coding downstream 13546 5373278 ~ 5396120 (+)
LOC103034165 LOC108434807 coding downstream 41610 5401342 ~ 5409502 (+)
LOC103044852 LOC108434764,LOC107671567 coding downstream 55477 5415209 ~ 5427765 (+)
LOC111195958 NA coding downstream 100025 5459757 ~ 5460504 (+)
lrpap1 lrpap1,LOC107749950,LOC107714242,LOC107551171,LOC107674255,LOC107556528 coding downstream 329974 5689706 ~ 5703849 (+)
G213915 NA non-coding upstream 33301 5315414 ~ 5315866 (+)
G213899 NA non-coding upstream 191095 5155318 ~ 5158072 (+)
G213892 NA non-coding upstream 227510 5076486 ~ 5121657 (+)
G213780 NA non-coding upstream 300040 5048048 ~ 5049127 (+)
G213776 NA non-coding upstream 316234 5029008 ~ 5032933 (+)
G213957 clgn,LOC107674239,LOC107737082,LOC107556507,LOC107712024,LOC107671330 non-coding downstream 6157 5365889 ~ 5371134 (+)
G213962 NA non-coding downstream 89654 5449386 ~ 5490339 (+)
LOC111195957 NA non-coding downstream 97993 5457725 ~ 5459394 (+)
G214002 NA non-coding downstream 139191 5498923 ~ 5499461 (+)
LOC111195979 NA non-coding downstream 204073 5563805 ~ 5639819 (+)
G213891 NA other upstream 175071 5173069 ~ 5174096 (+)
tbc1d9 tbc1d9,LOC107598515,LOC107594295 other upstream 758715 4510939 ~ 4590452 (+)
G213715 znf330 other upstream 920205 4398585 ~ 4428962 (+)
inpp4b inpp4b,LOC107657998 other upstream 982022 3900242 ~ 4367145 (+)
G213555 NA other upstream 1660175 3688569 ~ 3688992 (+)
G214006 NA other downstream 161452 5521184 ~ 5521675 (+)
G214175 NA other downstream 924049 6283781 ~ 6284368 (+)
LOC111196031 NA other downstream 1039344 6399076 ~ 6409068 (+)
pold4 NA other downstream 2451246 7810978 ~ 7813036 (+)
LOC103021346 LOC108412479 other downstream 2496430 7856162 ~ 7877118 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G2295 NA non-coding CI01000000 null 4090435 ~ 4092402 (+)
bowfin (Amia calva) G2125 NA non-coding CM030121.1 CM030121.1 12220322 ~ 12259643 (+)
mexican tetra (Astyanax mexicanus) G37097 NA non-coding NC_035900.1 CM008303.1 17713885 ~ 17714091 (+)