G214215


Basic Information

Item Value
gene id G214215
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 6380944 ~ 6473744 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU290742
ccaaaaaacaataaaacagtgtataaaaaaatcacaaatacaTTCATCAAACAGTTTATAAGATGGCAATGTATAGTGTATAGATTTCTGTTTATGGCCAGTTTTGCTCTCTAAATCTACGACTGGGATTTTAACATAAACTTGATCCTTAGGGCAacttatttaaacttaaaaatccTATTCTGTCACATTAAGTGTCCCGGTAAAGTATAAATGACATAATTTGAGCCTAAGAGAAACAGTGACTCATGAATCTTAACTGAATAACTGATGTCATCTACAAATGATATTTTAAGGTTTAAGCTTGATTACAGGGGGTGTGGTGTTGAGTTTTGTTCTTAAATATTCAGCCCTGTCACAATTGACTCTGTTATACATTTACTATAAAtgttatttgcataaaaatatacattttttta

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU290742 True 419 lncRNA 0.30 2 6380944 6473744

Neighbor

gene id symbol gene type direction distance location
trnak-cuu_9 NA coding upstream 54887 6325985 ~ 6326057 (+)
LOC103038786 LOC103368813 coding upstream 56714 6314852 ~ 6324230 (+)
LOC103039100 NA coding upstream 68337 6302716 ~ 6312607 (+)
LOC103039606 paip2b,LOC103039606,LOC107551309,LOC107674237,LOC108263850,LOC108426126 coding upstream 81393 6293110 ~ 6299551 (+)
LOC111195932 NA coding upstream 196768 6180250 ~ 6184176 (+)
trnam-cau_43 NA coding downstream 7814 6481558 ~ 6481629 (+)
lef1 lef1 coding downstream 175197 6648941 ~ 6728983 (+)
gstcd gstcd,LOC107757010,LOC107729368 coding downstream 311846 6785590 ~ 6993387 (+)
npnt npnt,LOC107729354,LOC107675850 coding downstream 538775 7012519 ~ 7142268 (+)
aimp1 aimp1,LOC107594432,LOC107757008,LOC107729369 coding downstream 799461 7273205 ~ 7301823 (+)
G214174 NA non-coding upstream 105021 6275714 ~ 6275923 (+)
LOC111195955 NA non-coding upstream 145224 6218386 ~ 6235720 (+)
G214134 NA non-coding upstream 267934 6112603 ~ 6113010 (+)
LOC111195966 NA non-coding upstream 293347 6086759 ~ 6087597 (+)
G214126 NA non-coding upstream 294443 6086241 ~ 6086501 (+)
G214283 NA non-coding downstream 107550 6581294 ~ 6581733 (+)
G214290 NA non-coding downstream 158321 6632065 ~ 6632374 (+)
G214294 NA non-coding downstream 191467 6665211 ~ 6698418 (+)
G214304 NA non-coding downstream 282661 6756405 ~ 6756758 (+)
G214313 NA non-coding downstream 283228 6756972 ~ 6759193 (+)
G214175 NA other upstream 96576 6283781 ~ 6284368 (+)
G214006 NA other upstream 859269 5521184 ~ 5521675 (+)
LOC103034491 scoc,LOC103034491,LOC108434805,LOC107674238,LOC108263532,LOC103132857,LOC103463814,LOC106946201 other upstream 1021212 5349167 ~ 5359732 (+)
G213891 NA other upstream 1206848 5173069 ~ 5174096 (+)
tbc1d9 tbc1d9,LOC107598515,LOC107594295 other upstream 1790492 4510939 ~ 4590452 (+)
pold4 NA other downstream 1337234 7810978 ~ 7813036 (+)
LOC103021346 LOC108412479 other downstream 1382418 7856162 ~ 7877118 (+)
G214773 NA other downstream 1637204 8110948 ~ 8111325 (+)
LOC103041196 LOC108443732,LOC107582026,LOC107601840 other downstream 2484555 8958299 ~ 9030598 (+)
sprn sprn other downstream 4101751 10575495 ~ 10583088 (+)

Expression


Co-expression Network