G214227


Basic Information

Item Value
gene id G214227
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 6469473 ~ 6470200 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU290760
GGGTAAGCGCTTTATTTCAGTACTTGGAGACTCCAAATAAGAAATGCAACACATCAGATGGTTTTCAAGAAAGTTTAAAAGAAATTCAATGAGATGATATCTGTTAATGGTGCTATAAATAACATGAGTATCAAACCATACAGTTTAGGGAATCAGAGAAAGGCAGTATGTCCGTCATTTGCTTTGTATATACATTGTAATGTACAGTGTATGCCTTATTCATCTCTGGGCCGGATCTGTTCTACAGGTAGTCTGAGTTGGTTTGGGTTTCGCAAGCGTCTCAGATCTTCCTCCACCGAAGCCAGTTCGTTCTTTAGCTGGTTGTATTTTGGCACATTAAACTGATGTCTTCTGGCCCCTCTGTAAAAGTAACGCAGGAACTGCCGGTCCTTTGCATCTGGGTAAACGTAGTCCTGCGGGAGAAAATTTACTATTGAGCTTCAGGCTTGTTTACATGCACAACATACAATATCATTATTGGATTTTGGTAGTTATCTGATTTTTTCAAGGGTTCATGAAGGTAGGACTGGAAGATATAGCCAAATtgagattaaaatataatttaaaaataaatattgatatgaacaaaaagcaaaaaaaaaaaaaaaaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU290760 True 611 lncRNA 0.36 2 6469473 6470200

Neighbor

gene id symbol gene type direction distance location
LOC103036066 NA coding upstream 11152 6454447 ~ 6458321 (+)
LOC103035747 NA coding upstream 21307 6435721 ~ 6448166 (+)
LOC103042697 NA coding upstream 36345 6428242 ~ 6433128 (+)
LOC103036371 NA coding upstream 53855 6411469 ~ 6415618 (+)
LOC103036975 NA coding upstream 70992 6387504 ~ 6398481 (+)
trnam-cau_43 NA coding downstream 11358 6481558 ~ 6481629 (+)
lef1 lef1 coding downstream 178741 6648941 ~ 6728983 (+)
gstcd gstcd,LOC107757010,LOC107729368 coding downstream 315390 6785590 ~ 6993387 (+)
npnt npnt,LOC107729354,LOC107675850 coding downstream 542319 7012519 ~ 7142268 (+)
aimp1 aimp1,LOC107594432,LOC107757008,LOC107729369 coding downstream 803005 7273205 ~ 7301823 (+)
G214174 NA non-coding upstream 193550 6275714 ~ 6275923 (+)
LOC111195955 NA non-coding upstream 233753 6218386 ~ 6235720 (+)
G214134 NA non-coding upstream 356463 6112603 ~ 6113010 (+)
LOC111195966 NA non-coding upstream 381876 6086759 ~ 6087597 (+)
G214126 NA non-coding upstream 382972 6086241 ~ 6086501 (+)
G214283 NA non-coding downstream 111094 6581294 ~ 6581733 (+)
G214290 NA non-coding downstream 161865 6632065 ~ 6632374 (+)
G214294 NA non-coding downstream 195011 6665211 ~ 6698418 (+)
G214304 NA non-coding downstream 286205 6756405 ~ 6756758 (+)
G214313 NA non-coding downstream 286772 6756972 ~ 6759193 (+)
LOC111196031 NA other upstream 60405 6399076 ~ 6409068 (+)
G214175 NA other upstream 185105 6283781 ~ 6284368 (+)
G214006 NA other upstream 947798 5521184 ~ 5521675 (+)
LOC103034491 scoc,LOC103034491,LOC108434805,LOC107674238,LOC108263532,LOC103132857,LOC103463814,LOC106946201 other upstream 1109741 5349167 ~ 5359732 (+)
G213891 NA other upstream 1295377 5173069 ~ 5174096 (+)
pold4 NA other downstream 1340778 7810978 ~ 7813036 (+)
LOC103021346 LOC108412479 other downstream 1385962 7856162 ~ 7877118 (+)
G214773 NA other downstream 1640748 8110948 ~ 8111325 (+)
LOC103041196 LOC108443732,LOC107582026,LOC107601840 other downstream 2488099 8958299 ~ 9030598 (+)
sprn sprn other downstream 4105295 10575495 ~ 10583088 (+)

Expression


Co-expression Network