G214340


Basic Information

Item Value
gene id G214340
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 6868717 ~ 6869146 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU290924
ctaacttttagtgcagcaatatatatgtatcaaatgaaaacagatgaggtggatgcagtagctatgttatgaagcttttttttttaagattactttattagcacttatataaaccgagtttatgcaaagtgactacaccaatacatttcatcatagcctactttatatatttgcatgaataattgatggaattactgtagaaactatagggatatttatcgtcatatcgcacagcagtataaggcgcacttaaaatcttttaataattctttaaaaattgtcagtgcgcttTATTATAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU290924 True 299 lncRNA 0.30 2 6868717 6869146

Neighbor

gene id symbol gene type direction distance location
lef1 lef1 coding upstream 139734 6648941 ~ 6728983 (+)
trnam-cau_43 NA coding upstream 387088 6481558 ~ 6481629 (+)
LOC103036066 NA coding upstream 410396 6454447 ~ 6458321 (+)
LOC103035747 NA coding upstream 420551 6435721 ~ 6448166 (+)
LOC103042697 NA coding upstream 435589 6428242 ~ 6433128 (+)
npnt npnt,LOC107729354,LOC107675850 coding downstream 143373 7012519 ~ 7142268 (+)
aimp1 aimp1,LOC107594432,LOC107757008,LOC107729369 coding downstream 404059 7273205 ~ 7301823 (+)
pkd2 pkd2,LOC107684281,LOC107583176,LOC107706826 coding downstream 597031 7466177 ~ 7481674 (+)
LOC103045679 NA coding downstream 660434 7529580 ~ 7549205 (+)
LOC103045994 NA coding downstream 682774 7551920 ~ 7584159 (+)
G214313 NA non-coding upstream 109524 6756972 ~ 6759193 (+)
G214304 NA non-coding upstream 111959 6756405 ~ 6756758 (+)
G214294 NA non-coding upstream 170299 6665211 ~ 6698418 (+)
G214290 NA non-coding upstream 236343 6632065 ~ 6632374 (+)
G214283 NA non-coding upstream 286984 6581294 ~ 6581733 (+)
LOC111195949 NA non-coding downstream 64809 6933955 ~ 6939059 (+)
G214362 NA non-coding downstream 140726 7009872 ~ 7010111 (+)
G214365 NA non-coding downstream 198801 7067947 ~ 7072835 (+)
G214465 NA non-coding downstream 551498 7420644 ~ 7422645 (+)
G214493 NA non-coding downstream 704019 7573165 ~ 7647997 (+)
LOC111196031 NA other upstream 459649 6399076 ~ 6409068 (+)
G214175 NA other upstream 584349 6283781 ~ 6284368 (+)
G214006 NA other upstream 1347042 5521184 ~ 5521675 (+)
LOC103034491 scoc,LOC103034491,LOC108434805,LOC107674238,LOC108263532,LOC103132857,LOC103463814,LOC106946201 other upstream 1508985 5349167 ~ 5359732 (+)
G213891 NA other upstream 1694621 5173069 ~ 5174096 (+)
pold4 NA other downstream 941832 7810978 ~ 7813036 (+)
LOC103021346 LOC108412479 other downstream 987016 7856162 ~ 7877118 (+)
G214773 NA other downstream 1241802 8110948 ~ 8111325 (+)
LOC103041196 LOC108443732,LOC107582026,LOC107601840 other downstream 2089153 8958299 ~ 9030598 (+)
sprn sprn other downstream 3706349 10575495 ~ 10583088 (+)

Expression


Co-expression Network