G214465


Basic Information

Item Value
gene id G214465
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 7420644 ~ 7422645 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU291068
TCACACTAGTTCTTATCCATCTATACCAAAGAGTCTGGGAAAACACAGATATTTCCCAAAATGCTAcgtaaattctaaaaaaaaagagtgaaactaacagaaaatgaacgtaaaatgaaagtaaaagacGCATATCAGTAAAGGCATTTCAATCAAACAGCCTGACTGACCTCACAAGGTTTGAATTCACATCATTAAAGACATTTCACTCCAAAGCTCGCATGACCACGTGAGAGTTATACAGAAAAAGAGCGAGGTGCTTCCAACATGTACCGTATACATAGATCACCAAAGACCTGCAGtcagagaacagagaaacaaaCCACAGGCCATTTTTTCTGCTGAGGTCATATGACAAATAACCCAAAGGAAGTAACCAGGGAACCAGATGTTTTCAAGTTCAGATCCTCATTTTGACCGAGTCTGCGCAACTATTACAGACAAAAGGTTGTAATTATTAAGGCAGCCGGGCCTAATTTCAAGAATTAATACACTGCAGGATGTAACGTATCATCCATCGCTTTGATGATTAATCAAaggcattttaaaaatgtgcctCATAACAGTAACATATTTTACAGTAGCCATCTTTATCCACAGTTTTAGTGAAAAGTAGGGAGATTCTCATGACACATAACTTACTCTTAGCAtgataaaacacattttgtaaaCTGTATAACAGCTTGAATTCTTCAGGTCTATCATTTTCTTTGGCTAGAAACTTTACACCAAACCAGTGGTTCACAAACCACATTCTGGAGTACACTGCGTCCAGCACATCTCACGGTTCTCTCCGCTTCACTGATGGACTGAATCAGGAGAGATAGAGCAGCGACAGTGCTGAGTACCAGACATGAGAACCTCTGCATTAAAGGTTAaaagagttcagcaaataaacactaaatcttaatttaaaaagtcACATATATGGCTTCAAGTGGCTCAGCAGACCAAGACACTGACACTATGGCAAGAAGATCGATGCAGGACATGATGCTTTGGCATCAGCAGACGgagccagagagagcatgatcttcacatgtatcagaggaggcatgtgattGTCCTCAGTCTCATACTTAGTGTTGGGAGCATTGcaagtgataggaggagtcctagtgagtgagtgagtgggttaATGGGCCGAGCTAAATTTTACTCGGCAGTTGGGTTTAGggaatacagtatattcactcGTACCTGTTTGTGGAATTTTTAAgcctgtatttaaataaatgcatactGGGGAGAGTTCAAatccagtgtttgttagcaaGTTAGCTTAGCATCTCCCATCTcgaaacaaaaaaagcaaacttCAGATACCAagcacgtctggctgacccactgTGTTTAAGGTAAATGATAAATCCTGTTAATATGATTTGTTGACTTCCCTATTCctttaaacctttttatttatctccactttttaaatcacaataaaatttAAATCCTCTTGGAGTTAGAATAAGTTAATAagcaaaatacattaaaaaacaccCTCGTAAGACTCGAAACAGTAGAAATAGACAGTAAATTGATGAGCCAGAGGTGTGCATTTCTCAAGTAACAAGGTACAATTCCATACACAACTTGCAGCCAAACAGTTTCataagtttttagtttttttttgggtggtcCCTCCACTTGACCAATTATTTTTCCTCCCCTTGTttcctcttttcctttttttttccctttttttattaacttttaatgaAACACTTCCATGCCTCCACCGGGGAAGTAACTTATGCTTTCTCCAGAGACTGGTAGTACTCCTTCAGCACTGTCCAGGCCTTCAGGGCCATGAAGCCCTCTGGTGGGTTCTGGCCTTCTCGAGCCATCCTTCTCATGCGGGTGCCTGAGATGAAGTCGTA

Function

GO:

id name namespace
GO:0016072 rRNA metabolic process biological_process
GO:0006364 rRNA processing biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU291068 True 1883 lncRNA 0.40 2 7420644 7422645

Neighbor

gene id symbol gene type direction distance location
aimp1 aimp1,LOC107594432,LOC107757008,LOC107729369 coding upstream 118821 7273205 ~ 7301823 (+)
npnt npnt,LOC107729354,LOC107675850 coding upstream 278376 7012519 ~ 7142268 (+)
gstcd gstcd,LOC107757010,LOC107729368 coding upstream 427257 6785590 ~ 6993387 (+)
lef1 lef1 coding upstream 691661 6648941 ~ 6728983 (+)
trnam-cau_43 NA coding upstream 939015 6481558 ~ 6481629 (+)
pkd2 pkd2,LOC107684281,LOC107583176,LOC107706826 coding downstream 43532 7466177 ~ 7481674 (+)
LOC103045679 NA coding downstream 106935 7529580 ~ 7549205 (+)
LOC103045994 NA coding downstream 129275 7551920 ~ 7584159 (+)
LOC103023957 tcirg1a,LOC108434797,LOC105908477,LOC106609897,LOC107679885 coding downstream 259393 7682038 ~ 7699304 (+)
LOC107197796 NA coding downstream 312030 7734675 ~ 7742087 (+)
G214365 NA non-coding upstream 347809 7067947 ~ 7072835 (+)
G214362 NA non-coding upstream 410533 7009872 ~ 7010111 (+)
LOC111195949 NA non-coding upstream 481585 6933955 ~ 6939059 (+)
G214340 NA non-coding upstream 551498 6868717 ~ 6869146 (+)
G214313 NA non-coding upstream 661451 6756972 ~ 6759193 (+)
G214493 NA non-coding downstream 150520 7573165 ~ 7647997 (+)
G214502 NA non-coding downstream 187438 7610083 ~ 7651178 (+)
G214533 LOC108434796 non-coding downstream 280001 7702646 ~ 7705942 (+)
G214614 NA non-coding downstream 320555 7743200 ~ 7743407 (+)
G214613 NA non-coding downstream 321727 7744372 ~ 7745072 (+)
LOC111196031 NA other upstream 1011576 6399076 ~ 6409068 (+)
G214175 NA other upstream 1136276 6283781 ~ 6284368 (+)
G214006 NA other upstream 1898969 5521184 ~ 5521675 (+)
LOC103034491 scoc,LOC103034491,LOC108434805,LOC107674238,LOC108263532,LOC103132857,LOC103463814,LOC106946201 other upstream 2060912 5349167 ~ 5359732 (+)
G213891 NA other upstream 2246548 5173069 ~ 5174096 (+)
pold4 NA other downstream 388333 7810978 ~ 7813036 (+)
LOC103021346 LOC108412479 other downstream 433517 7856162 ~ 7877118 (+)
G214773 NA other downstream 688303 8110948 ~ 8111325 (+)
LOC103041196 LOC108443732,LOC107582026,LOC107601840 other downstream 1535654 8958299 ~ 9030598 (+)
sprn sprn other downstream 3152850 10575495 ~ 10583088 (+)

Expression


Co-expression Network