G214533 (LOC108434796)


Basic Information

Item Value
gene id G214533
gene name LOC108434796
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 7702646 ~ 7705942 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU291164
CCATTTGTACCAGGCCTTGCAGACCCTCATACAGACAGCCAGTTCGGTTCGGCTCAGGTAGCGGAACACAGACACCCACACCTCCTTCTCACAGCCTGGCTCGTTTCCCACATCCCGAAATGAGGGATGAGAGAGCAGGGAGGGCGGGGAGGAGCCTGTGGCAgatgggggaggaggaggaggagatacTGAGGAGCgagaggaggtggaggaaggGGATACTGTGTCTCTTTCTTGGCCATTGTGAGAGGAGCGTTTGGGGCGGCCAGATGAAAGGACAGCTTTGGGTTGGGAGAGACCGTTGCCAGCGGTCAGAGAGCTGCCGTTTTTCTGACGAAGCTTGTGAACAGGAGTGCGGGGAGACATGGCAGCCTCCAGTTTGGGTACAATAGCACCAGGATCACGCTTGGCCTTTGCGGGGCGCTGTAGTGTGACGGTCAGGTAAGAACCATTTAACAGTTCGTCATTCAAGTCTGAAACAAGCAAGACAGGAGGGTCCGTTTCAGAGTCTGAATGGTTCTCACCTTCCTCGTCCTCTTCATCCTCCCCTCCATCATCCAGATCCTCCATCTCTTCATCCTCCCCATCAAAGTCTCTTTCCTCACTATCTTCATCCTCATCGTCGTCCTCTTCATCATCGTCGTCGTCCTCTTCACCTCTGCGCCGCCGCCTTGAACGGTGCTCTTTTCCTGACCGGCCCACATGCCTTTCATCATCACTCtcatcctcttcttcctcctcgtcgtcttcatcttcctcatcatcgtcatcatcgtCGTCATCCTCTGTTTCATAACGCCTTTTGTGCGATTTAGACCCACCTCGAAAACGAACGCTTCCCCTGCGCTCACCCCTCGCATTAAGTACGCGCTTCATTTTCTGGGAGGAGGAATTTGTAGCACCGCCCCCACGATGAGAGGAACTCCTCCACACACCGCGTTTACTAGACCCAAAGCTACGCCGAGCTGACGGCGCATTCCTTGACTGAAGTGATGATTTCCGCCTTCCATCTCCATCCTCATCATCACTACCCGAACCATCATCTCGGTCCTTTCCATGCCTCCGAAAGATCTTCGCCACTCGAGGATCTACTGAAGAAGACTTGCGCTTaTGCATTTTGGTTCCTTCCAATTTAATCTCAGATTCTGTGTTTTTGCCGACAACACACTTAGGACACTCCCAGCAACTTGGGAGATCTTTGTTGACTACACCCTCCCCAGGCACCTTTAGGCAACTGGGGTGGGCAATCTGGGCACAGTTGGAGCACTCCATGAGCTCTTCTCCGGTGTCCTGATTCCCTTCTTCACAGATCTCACACACTGCTGAAAGAGGCAGGCCAGG

Function

NR:

description
PREDICTED: lysine-specific demethylase 2A-like isoform X4

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU291164 True 1341 lncRNA 0.54 4 7702646 7705942

Neighbor

gene id symbol gene type direction distance location
LOC103023957 tcirg1a,LOC108434797,LOC105908477,LOC106609897,LOC107679885 coding upstream 3342 7682038 ~ 7699304 (+)
LOC103045994 NA coding upstream 118487 7551920 ~ 7584159 (+)
LOC103045679 NA coding upstream 153441 7529580 ~ 7549205 (+)
pkd2 pkd2,LOC107684281,LOC107583176,LOC107706826 coding upstream 220972 7466177 ~ 7481674 (+)
aimp1 aimp1,LOC107594432,LOC107757008,LOC107729369 coding upstream 400823 7273205 ~ 7301823 (+)
LOC107197796 NA coding downstream 28733 7734675 ~ 7742087 (+)
LOC103022802 NA coding downstream 43027 7748969 ~ 7757553 (+)
LOC103021660 si:dkey-28b4.8,LOC108434786,LOC107664566,LOC107551445,LOC108262771,LOC107556825 coding downstream 109881 7815823 ~ 7840389 (+)
tmx2 tmx2,LOC108412483,LOC105022872,LOC107664575 coding downstream 177252 7883194 ~ 7892498 (+)
LOC103028482 LOC108434761,LOC105891496,LOC106611657,LOC101069382,LOC108243062,LOC106594846,LOC106604652 coding downstream 314707 8020649 ~ 8029171 (+)
G214502 NA non-coding upstream 51468 7610083 ~ 7651178 (+)
G214493 NA non-coding upstream 54649 7573165 ~ 7647997 (+)
G214465 NA non-coding upstream 280001 7420644 ~ 7422645 (+)
G214365 NA non-coding upstream 629811 7067947 ~ 7072835 (+)
G214362 NA non-coding upstream 692535 7009872 ~ 7010111 (+)
G214614 NA non-coding downstream 37258 7743200 ~ 7743407 (+)
G214613 NA non-coding downstream 38430 7744372 ~ 7745072 (+)
G214618 NA non-coding downstream 54593 7760535 ~ 7760783 (+)
LOC111196001 NA non-coding downstream 69694 7775636 ~ 7776179 (+)
G214638 ssrp1,ssrp1b,LOC107746478 non-coding downstream 90472 7796414 ~ 7800876 (+)
LOC111196031 NA other upstream 1293578 6399076 ~ 6409068 (+)
G214175 NA other upstream 1418278 6283781 ~ 6284368 (+)
G214006 NA other upstream 2180971 5521184 ~ 5521675 (+)
LOC103034491 scoc,LOC103034491,LOC108434805,LOC107674238,LOC108263532,LOC103132857,LOC103463814,LOC106946201 other upstream 2342914 5349167 ~ 5359732 (+)
G213891 NA other upstream 2528550 5173069 ~ 5174096 (+)
pold4 NA other downstream 105036 7810978 ~ 7813036 (+)
LOC103021346 LOC108412479 other downstream 150220 7856162 ~ 7877118 (+)
G214773 NA other downstream 405006 8110948 ~ 8111325 (+)
LOC103041196 LOC108443732,LOC107582026,LOC107601840 other downstream 1252357 8958299 ~ 9030598 (+)
sprn sprn other downstream 2869553 10575495 ~ 10583088 (+)

Expression


Co-expression Network