G214613


Basic Information

Item Value
gene id G214613
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 7744372 ~ 7745072 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU291279
ACTTATGTTTACCAGTTACATCAGGCACAAGTGGCTATGCATAAGTGTATAATTCTGCACTAAATTAATACAGTAATCCTACGTTTAGTTTtgtcaattattttttattctgagattatttattttaataaattcattCCTCAATCCTCAGATTgaggctccgagtggtccagtggaatAAAGTCACTATGATATGAGGATTCCTGGTTCAAATCTTTGATCATTctgcttggcatcagcagccggagtccgagagaacGCAAacggtctttctctctctgggtgggtagatggcatttCCCCTAATCAATCCCATTGTGATTCTGGCtggcacaggtgtctgttagctgatgcatCACAGCTGGGTTTTCCAGTTCATATGTGCATATATGAATGAAGATTTGGCCTTGAGCCTTTTTAATCGGGTAGAAAAGAAATTATTATAAAGAATTAATTCAGTCACTACTCATTTACAGGAGCAGCAGAGAGGATGGGTGGTGGGGTCAGTCCTCAATCAGTccgtattttgtttttgttcacgATGTCCGTTTGTGCGCATTTTGAGATGTGCGTAAGAAAGCAGAAGCTGTAGTGGAACTGAAGAATGTCGCACACTTTAGACCAGAAGTGTCCCGTGAGACGCTGGAAAGGCCACC
>TU291280
gattatttattttaataaattcattCCTCAATCCTCAGATTgaggctccgagtggtccagtggaatAAAGTCACTATGATATGAGGATTCCTGGTTCAAATCTTTGATCATTctgcttggcatcagcagccggagtccgagagaacGCAAacggtctttctctctctgggtgggtagatggcatttCCCCTAATCAATCCCATTGTGATTCTGGCtggcacaggtgtctgttagctgatgcatCACAGCTGGGTTTTCCAGTTCATATGTGCATATATGAATGAAGATTTGGCCTTGAGCCTTTTTAATCGGGTAGAAAAGAAATTATTATAAAGAATTAATTCAGTCACTACTCATTTACAGGAGCAGCAGAGAGGATGGGTGGTGGGGTCAGTCCTCAATCAGTccgtattttgtttttgttcacgATGTCCGTTTGTGCGCATTTTGAGATGTGCGTAAGAAAGCAGAAGCTGTAGTGGAACTGAAGAATGTCGCACACTTTAGACCAGAAGTGTCCCGTGAGACGCTGGAAAGGCCACCACTGCGCGAGCGCGTGGTCCAGCAGCTTCAGCGCCACGAAGCCGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU291279 True 656 lncRNA 0.41 1 7744372 7745027
TU291280 False 588 lncRNA 0.46 1 7744485 7745072

Neighbor

gene id symbol gene type direction distance location
LOC107197796 NA coding upstream 2285 7734675 ~ 7742087 (+)
LOC103023957 tcirg1a,LOC108434797,LOC105908477,LOC106609897,LOC107679885 coding upstream 45068 7682038 ~ 7699304 (+)
LOC103045994 NA coding upstream 160213 7551920 ~ 7584159 (+)
LOC103045679 NA coding upstream 195167 7529580 ~ 7549205 (+)
pkd2 pkd2,LOC107684281,LOC107583176,LOC107706826 coding upstream 262698 7466177 ~ 7481674 (+)
LOC103022802 NA coding downstream 3897 7748969 ~ 7757553 (+)
LOC103021660 si:dkey-28b4.8,LOC108434786,LOC107664566,LOC107551445,LOC108262771,LOC107556825 coding downstream 70751 7815823 ~ 7840389 (+)
tmx2 tmx2,LOC108412483,LOC105022872,LOC107664575 coding downstream 138122 7883194 ~ 7892498 (+)
LOC103028482 LOC108434761,LOC105891496,LOC106611657,LOC101069382,LOC108243062,LOC106594846,LOC106604652 coding downstream 275577 8020649 ~ 8029171 (+)
slc43a3 slc43a3 coding downstream 370007 8115079 ~ 8127288 (+)
G214614 NA non-coding upstream 965 7743200 ~ 7743407 (+)
G214533 LOC108434796 non-coding upstream 38430 7702646 ~ 7705942 (+)
G214502 NA non-coding upstream 93194 7610083 ~ 7651178 (+)
G214493 NA non-coding upstream 96375 7573165 ~ 7647997 (+)
G214465 NA non-coding upstream 321727 7420644 ~ 7422645 (+)
G214618 NA non-coding downstream 15463 7760535 ~ 7760783 (+)
LOC111196001 NA non-coding downstream 30564 7775636 ~ 7776179 (+)
G214638 ssrp1,ssrp1b,LOC107746478 non-coding downstream 51342 7796414 ~ 7800876 (+)
LOC111195953 NA non-coding downstream 95856 7840928 ~ 7845966 (+)
G214670 NA non-coding downstream 104625 7849697 ~ 7850433 (+)
LOC111196031 NA other upstream 1335304 6399076 ~ 6409068 (+)
G214175 NA other upstream 1460004 6283781 ~ 6284368 (+)
G214006 NA other upstream 2222697 5521184 ~ 5521675 (+)
LOC103034491 scoc,LOC103034491,LOC108434805,LOC107674238,LOC108263532,LOC103132857,LOC103463814,LOC106946201 other upstream 2384640 5349167 ~ 5359732 (+)
G213891 NA other upstream 2570276 5173069 ~ 5174096 (+)
pold4 NA other downstream 65906 7810978 ~ 7813036 (+)
LOC103021346 LOC108412479 other downstream 111090 7856162 ~ 7877118 (+)
G214773 NA other downstream 365876 8110948 ~ 8111325 (+)
LOC103041196 LOC108443732,LOC107582026,LOC107601840 other downstream 1213227 8958299 ~ 9030598 (+)
sprn sprn other downstream 2830423 10575495 ~ 10583088 (+)

Expression


Co-expression Network