G214853


Basic Information

Item Value
gene id G214853
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 8454744 ~ 8456163 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU291597
aagaagaagaaaagtcaTGATTTATTCAAATGTGCAAACCGACAGAGAGAAGAGGGTGAAGCAGTGTGAAGGTCAGACAGAAGTGTTGCAGTCACTGAGAGGGTGAAGATAATATTACAGGTAACGACACACAAGCAGACAAGAACTCATCACCCACAGGTTACTCATCAACACTCACAGTGGAAAGACGAAGGAAGGAGGAAAGAGGTttacagcaaaacacacactacacaacattcATACATCGCTGTTCACAGATACAGAATCTGTACAATGCTGAGTTCATGTGGGGTTTAGCAGTTACGGTCATCTTACAGCTCCATAAGTATTCAGACACAAGATACTCGTCTAATTTTGCCTCTGTACACCTCTGACAaaaactttagattttttttaattaagcagCCAATATAGAGATCTGgaacaaaattaagagaccacttcagtttctgaatcagtttctctgattttgctatttatagctatatgtttgaataaaatgaacattgctgttttattctataaactacagacaacatttctaccaaattgcaaataaagatagacatttagagcatttatttgcagaaaatgagaaatgactgaaataacaataaataaaaaagatgcagagctttcagacctcaaataatgcaaagaaaacaagttcatattcataaagttttaaaagttcagaaatcaatatttggttgaataaccctggttttatgttgtcctccaccagtcttacacactgcttttggataactttatgcctttactcctggtgcaaaaataattcaagcagttcagcttggtttgatggtttgtagggttttcagtttggtaaaatgcCAAACAGTGACTGTTCTCATCTTCTCATCTTAATCACTTTCTTTAAAATCCATTAAGGTGGTGTACCGaggcaaaacaaacaaataaaagtgtACCTGCCTAAATACTTATGAACCGGACTGTATTTATTGACGAGTTTTGGTATAATATAAAAGATCAGGTTATAAATAAGTGTGTATACATCAGTCCTCACATAAAGACACTCAGTATGGGTCTCTTCTAGCTCACtaatcagctgaagctgaatTCACTATTCTTCCTAATGACGTTTAATCTGCTGAAGAGCAGAAACAGTACAGATCAGTTTCTCATTAGTTTTGCAGATTCTAacagtttaacacattttatatatctttattttaaagcaccTAATCTAgtgtctacgttttttttttttcatctacgGTGCGGCATCTATTGCACTACACTACATCTCTGTAGCTACAAAACCCTGAGGCTGCCCAGGACAGAGTCCTCACCAGGACAGGAGAGTCCTGTTCTCCTGTTGCTCCTTTCTTATGCTCTGTGTACATGAGGCCTGT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU291597 True 1397 lncRNA 0.37 2 8454744 8456163

Neighbor

gene id symbol gene type direction distance location
galnt2 galnt2,LOC107725470,LOC107676591,LOC107666462,LOC107743534 coding upstream 926 8306242 ~ 8453818 (+)
LOC103036505 LOC107556808,LOC107556784 coding upstream 188131 8254584 ~ 8266613 (+)
LOC107197794 LOC108434776,LOC106930291,LOC102224490,LOC103132489,LOC106944652,LOC105931504,LOC103464124,LOC107393648,LOC106518818 coding upstream 202173 8245563 ~ 8252571 (+)
LOC103029746 LOC103029746 coding upstream 211042 8238862 ~ 8243702 (+)
LOC103035882 NA coding upstream 227520 8209706 ~ 8227224 (+)
cog2 cog2,LOC107601846,LOC107725477,LOC107552949,LOC107666500,LOC107743537 coding downstream 58195 8514358 ~ 8530448 (+)
phactr2 phactr2 coding downstream 84802 8540965 ~ 8649769 (+)
LOC103040587 rgs17,LOC103040587,LOC108262465,LOC108434957,LOC107725462,LOC107552952 coding downstream 375082 8831245 ~ 8861433 (+)
LOC103042822 si:ch211-120p12.3,LOC108434955,LOC108263591,LOC103372805,LOC107375814,LOC107676554,LOC107666507,LOC107552954 coding downstream 464305 8920468 ~ 8940545 (+)
LOC103044072 LOC108443735,LOC108263510 coding downstream 807476 9263639 ~ 9293642 (+)
LOC111195960 NA non-coding upstream 209729 8237642 ~ 8245015 (+)
G214704 ctnnd1 non-coding upstream 369467 8074834 ~ 8085277 (+)
LOC111195956 NA non-coding upstream 525579 7927113 ~ 7929165 (+)
G214684 NA non-coding upstream 528240 7899502 ~ 7926504 (+)
G214686 NA non-coding upstream 546977 7905695 ~ 7907767 (+)
G214868 NA non-coding downstream 159930 8616093 ~ 8658455 (+)
G214875 NA non-coding downstream 241765 8697928 ~ 8699697 (+)
G214881 NA non-coding downstream 262660 8718823 ~ 8722998 (+)
G214942 NA non-coding downstream 382391 8838554 ~ 8841483 (+)
G214947 NA non-coding downstream 422195 8878358 ~ 8881610 (+)
G214773 NA other upstream 343419 8110948 ~ 8111325 (+)
LOC103021346 LOC108412479 other upstream 577626 7856162 ~ 7877118 (+)
pold4 NA other upstream 641708 7810978 ~ 7813036 (+)
LOC111196031 NA other upstream 2045676 6399076 ~ 6409068 (+)
G214175 NA other upstream 2170376 6283781 ~ 6284368 (+)
LOC103041196 LOC108443732,LOC107582026,LOC107601840 other downstream 502136 8958299 ~ 9030598 (+)
sprn sprn other downstream 2119332 10575495 ~ 10583088 (+)
G215513 polr1b other downstream 2490916 10947079 ~ 10948287 (+)
cpeb3 cpeb3,LOC106604870 other downstream 2669537 11125700 ~ 11195423 (+)
LOC111195936 NA other downstream 3154155 11610318 ~ 11613123 (+)

Expression


Co-expression Network