G214875


Basic Information

Item Value
gene id G214875
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 8697928 ~ 8699697 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU291626
TATATTTCACagcaaataatttattttgagattgaatataaaaaaactccATAATACAATTTTGCCTTTACATACATCCTTTTCAGAAGCAAATAATGATGCTCTTGTTGGTCAGTAAGCAGAAAAATGCCATCATGCAGAATTCAGAATTCTGGCAAAGATTAATTTGAAAGTGTTCATTccataaaatgttttctttttgtcagAGAATCTCTAAATGTATTGATAGTTGATACATAATTACATCAGAATGTACAGAAGAATAACAGAGCTGCATTAGCAATCACAATACATCATTTGCAACCAGTgaaggataaaaaaaattatacattgtaGCAAAAGAcactacattttttatattctatgtTGAATTctatataatctatactggAACAGTGTGTGTCTTTTGAGCTAGGAGTTGCTCACAGATTTGGATTTAAGTTGTGCTACCGCTGGCAAGAAATACAAGCACAAAACATAACAGCCAAATCTGAAAAGCtttacaaatgcaaaaatattaaatttagttATTAAACTGAACACTGAAGTACAATACAATGACAAGTAAAAACGTCCTGTTAATATACATGGCCTCATGAACATTCTATTTCATCCTACTTACAACATATAACTTAACAGCCACGTTATGATGGCACATTTTGGCAGATATAAAGCACTGGTTCGGTTTATAAAAAGATTATTCACaatacatatttaacatatataacatataattgTCCTTTTTTAAAGGAACTGGAGATAAATACAAGGAACTAAAGGAACTTATTTCAGATCTAGTCCTATTGTAAAGAGACAGCTACAACAGTCTGAGAAAAGGCAAAGCAGAAATATAGCATTTATTATACAAATCATGTGGGCCTTAAAGCTTAAAaatagatggacagacagacaacatGCCTCAGATTTTGTAATATCAGTACTTTTGAAAAGTAAGCTACTAATCTTCAAAGCTcataaaacactgcagaaacAGTTTATGGGTCATTATCGATAATAATGTACCTTTTGTGTGAAAGTTTATGTCCatgcattttatacagttttttttatatgtgtggGGGGTGGAGTGGTTGGGCATTTCAATTATCGACTCTAGATGAACCACATTTTCAATTACTGACAGTTTTTACTAAAACTGTCCACTCTTTTCATTATCCACTCTGTTGTGCAGCTTATCATGCTGGGGTGGAtgcaaacaagaaataaaatgtgattaagctggcaaatatgatttctgtcTAGTCTGgggtcttataaatatgataaatagtcaAAAGTTCCAGGATTTATTGTGCACAGTCAAGCGTGGCGAGGATGAAGGTCTGTAATTTTACTCAGAACTGTGTTTTAGAACAGAAGGAACAGAGTTACAGTCAGTGTATTGCTTCATTTAACGATGTGAAAGACTActgcagcagtaaaactgtactctgtgtgtgtgtgtgtgtgagagtccaGGTGAGAGAACAGAACAGTGTGGCAGGCATCTCCACTTATGTGATTATTTATCGAAGGATAAGTCAGTTATCTAATTATCGTAACAAGAATTGCATGAAtacctaaaataaaaagtgaataatCTGAGAAATATGATTTATGCGAAgtcttttaaatataatatacacatataatatattatggaTATAGTCAGTTACTTAATTATCGTAACAAGAATGAAATGTTCTGTAAAATTGCATGAGtacctaaaataaaaagtgaatgaGCT

Function

GO:

id name namespace
GO:0004300 enoyl-CoA hydratase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU291626 True 1747 lncRNA 0.32 2 8697928 8699697

Neighbor

gene id symbol gene type direction distance location
phactr2 phactr2 coding upstream 48159 8540965 ~ 8649769 (+)
cog2 cog2,LOC107601846,LOC107725477,LOC107552949,LOC107666500,LOC107743537 coding upstream 167480 8514358 ~ 8530448 (+)
galnt2 galnt2,LOC107725470,LOC107676591,LOC107666462,LOC107743534 coding upstream 244110 8306242 ~ 8453818 (+)
LOC103036505 LOC107556808,LOC107556784 coding upstream 431315 8254584 ~ 8266613 (+)
LOC107197794 LOC108434776,LOC106930291,LOC102224490,LOC103132489,LOC106944652,LOC105931504,LOC103464124,LOC107393648,LOC106518818 coding upstream 445357 8245563 ~ 8252571 (+)
LOC103040587 rgs17,LOC103040587,LOC108262465,LOC108434957,LOC107725462,LOC107552952 coding downstream 131548 8831245 ~ 8861433 (+)
LOC103042822 si:ch211-120p12.3,LOC108434955,LOC108263591,LOC103372805,LOC107375814,LOC107676554,LOC107666507,LOC107552954 coding downstream 220771 8920468 ~ 8940545 (+)
LOC103044072 LOC108443735,LOC108263510 coding downstream 563942 9263639 ~ 9293642 (+)
kif1bp kif1bp,LOC107743600 coding downstream 732907 9432604 ~ 9440914 (+)
srgn srgn coding downstream 761633 9461330 ~ 9466106 (+)
G214868 NA non-coding upstream 39473 8616093 ~ 8658455 (+)
G214853 NA non-coding upstream 241765 8454744 ~ 8456163 (+)
LOC111195960 NA non-coding upstream 452913 8237642 ~ 8245015 (+)
G214704 ctnnd1 non-coding upstream 612651 8074834 ~ 8085277 (+)
LOC111195956 NA non-coding upstream 768763 7927113 ~ 7929165 (+)
G214881 NA non-coding downstream 19126 8718823 ~ 8722998 (+)
G214942 NA non-coding downstream 138857 8838554 ~ 8841483 (+)
G214947 NA non-coding downstream 178661 8878358 ~ 8881610 (+)
G214986 NA non-coding downstream 278712 8978409 ~ 8978780 (+)
G214988 NA non-coding downstream 279631 8979328 ~ 8980408 (+)
G214773 NA other upstream 586603 8110948 ~ 8111325 (+)
LOC103021346 LOC108412479 other upstream 820810 7856162 ~ 7877118 (+)
pold4 NA other upstream 884892 7810978 ~ 7813036 (+)
LOC111196031 NA other upstream 2288860 6399076 ~ 6409068 (+)
G214175 NA other upstream 2413560 6283781 ~ 6284368 (+)
LOC103041196 LOC108443732,LOC107582026,LOC107601840 other downstream 258602 8958299 ~ 9030598 (+)
sprn sprn other downstream 1875798 10575495 ~ 10583088 (+)
G215513 polr1b other downstream 2247382 10947079 ~ 10948287 (+)
cpeb3 cpeb3,LOC106604870 other downstream 2426003 11125700 ~ 11195423 (+)
LOC111195936 NA other downstream 2910621 11610318 ~ 11613123 (+)

Expression


Co-expression Network