G214947


Basic Information

Item Value
gene id G214947
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 8878358 ~ 8881610 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU291720
tgtttttattattaaaatgtgttgagTGGGTTTTTATATTTAGTGGCTCAGTGATTCTCATATTTATGAACTTGATATATCGTACCGCTCCATCATAAATGTTACAACACTTTACACTGTGTACACATGATACTGTGTATCCAATTCAGACAATCAATATCTTACAAGTCACTGTTTGTCCCGTATCTACAGGAAGAAACACCATCATTCACACTCGCTGGCCTTGTCATTATATCCTCTTAAACTCTCCCAGTGGAGTAACTGCTCACATGTCTCAGATCTGACCACCGAACATAGTGCTGGACACAGCAGATCACGCCAGGATTCCTtttactatacagctctggaaaaattaagagaccacttcagtttctgaaccagttttttctgattttgctatttaaaggtttatgtttgagtaaaatgaacattgttgttttattctattaactagggacaatatttttttccaaattccaaataaaaatattgtcatttagagcatttatttgcagaaaatgagaaatggctgaattaacaaaaaagatgcagagctttcagacctcaaataatgcaaagttcaaattcataaagttttaagagttcaaaaatcaatatttggtggaataaccctggtgtttatTCACAGCTTgcatgcatgttctcctccaccagtcatacacactgcttttggataactttggatacgccactcctggtgcaaaaattcaagcagttcagcttgagcagtttgatggcttgtgatcatccatcttccttttgatttatattccatagattttcaatttggtaaaataaataaaaaaactcataatttttaagtggtttcttatttatttccagagctgtatattcaaatGAGGTCTTATGTTTGTTTGCGAGGTACCATTTACACATTAACCACACATCTGTTATATTATTGgataaaactattaaataaactaaataaaaatggttTTAGATAAACAGAAAAGAATAAAGCACATTAGCGAGAAAGCGTAAAAGTATTAAAGCAGATATGCTTTATACTGACAGATTTGTATGAAATCACAAATCAGTAGCTGTTACTGATGCTGTGATTCACATCTTTAGCTTTACATCACTTTCAGTTCATCCATCTACCGGTATTATAAAGGACAGAGCAGGAAGAGCCACCaggtcctctctctctcttactgaaGACATTAGAAATGGTTTATTGGTCTAAGAGAAGCACTGTACATGCACAGTTAAACTGCACAGCTCCCAGGAATGTCTTTGTGTCCATGCTTCAAAAACCAATCAGACAGTGACGACACACAAATGAACACCAGACAGTGACAGTGAGATGACCATGATGATCAGGCCTTGCAAAATGCACAGAGAAATGACTGTGATGTAATAgatggttttgtgtttgttttttgtaagaaactgtattttttgcattggtTGTCTCCTCTATGCGACTCAGAGAGAAGAAGCTTTAAGAGCTATTAGAGCTGGATTAGTTTTACCGCTGGAACTTCCTCACATTCCCACAAACCCTACCATCAGTTTATCAGCAAATTAAACTTCCCTTGATCAAATTCACAACAGTTGCATTCTAATGGCTAAAGATATTCTTACTGCAGTTCAGGTGATGCAAAATTTGAACCATTTAACaatttgatttcattttttagcttttacaATTTTCACAGTTtcctgaacattttaaattcagGAAGTTTGCACAACATTTGTAAAGTTTCTGCAATTcagaacgtttaaaaaaaacgaaattgtgatttaaacttttaaaatatgtaacGTTTCTGCAATTTAGAAAGTTTTCAAAATTGAAAATGTGATTCAAACTTTCCAAATTCGGAACGTTTCGGCAATTCTCATGATCTCTGCCCAGTTCGGTGGGAAACCTGTATTGGTTTGGTTTAAGAATGTCTGGTGAGGCAGCAGGAGGATGTATCAGATGGTTTTCTGCTCTGGTGCCTCGTGAAAGGCTGAGGTGGACTCCTCCTGGCTCTTGTCCATGCTTTGCTCTGAGGGTTTATCATCATTCGCTGTGTTGTCCTTGGGCGCTGTTACCACTGTAGAGCTGGCGTCTATACTCTCGTAGGCTTCTGAGGTCCACT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU291720 True 2135 lncRNA 0.36 2 8878358 8881610

Neighbor

gene id symbol gene type direction distance location
LOC103040587 rgs17,LOC103040587,LOC108262465,LOC108434957,LOC107725462,LOC107552952 coding upstream 16925 8831245 ~ 8861433 (+)
phactr2 phactr2 coding upstream 228589 8540965 ~ 8649769 (+)
cog2 cog2,LOC107601846,LOC107725477,LOC107552949,LOC107666500,LOC107743537 coding upstream 347910 8514358 ~ 8530448 (+)
galnt2 galnt2,LOC107725470,LOC107676591,LOC107666462,LOC107743534 coding upstream 424540 8306242 ~ 8453818 (+)
LOC103036505 LOC107556808,LOC107556784 coding upstream 611745 8254584 ~ 8266613 (+)
LOC103042822 si:ch211-120p12.3,LOC108434955,LOC108263591,LOC103372805,LOC107375814,LOC107676554,LOC107666507,LOC107552954 coding downstream 38858 8920468 ~ 8940545 (+)
LOC103044072 LOC108443735,LOC108263510 coding downstream 382029 9263639 ~ 9293642 (+)
kif1bp kif1bp,LOC107743600 coding downstream 550994 9432604 ~ 9440914 (+)
srgn srgn coding downstream 579720 9461330 ~ 9466106 (+)
vps26a vps26a,LOC107666532 coding downstream 587474 9469084 ~ 9480545 (+)
G214942 NA non-coding upstream 36875 8838554 ~ 8841483 (+)
G214881 NA non-coding upstream 155360 8718823 ~ 8722998 (+)
G214875 NA non-coding upstream 178661 8697928 ~ 8699697 (+)
G214868 NA non-coding upstream 219903 8616093 ~ 8658455 (+)
G214853 NA non-coding upstream 422195 8454744 ~ 8456163 (+)
G214986 NA non-coding downstream 96799 8978409 ~ 8978780 (+)
G214988 NA non-coding downstream 97718 8979328 ~ 8980408 (+)
G214990 NA non-coding downstream 100304 8981914 ~ 8986115 (+)
G215011 NA non-coding downstream 187385 9068995 ~ 9069867 (+)
G215039 NA non-coding downstream 406466 9288076 ~ 9310173 (+)
G214773 NA other upstream 767033 8110948 ~ 8111325 (+)
LOC103021346 LOC108412479 other upstream 1001240 7856162 ~ 7877118 (+)
pold4 NA other upstream 1065322 7810978 ~ 7813036 (+)
LOC111196031 NA other upstream 2469290 6399076 ~ 6409068 (+)
G214175 NA other upstream 2593990 6283781 ~ 6284368 (+)
LOC103041196 LOC108443732,LOC107582026,LOC107601840 other downstream 76689 8958299 ~ 9030598 (+)
sprn sprn other downstream 1693885 10575495 ~ 10583088 (+)
G215513 polr1b other downstream 2065469 10947079 ~ 10948287 (+)
cpeb3 cpeb3,LOC106604870 other downstream 2244090 11125700 ~ 11195423 (+)
LOC111195936 NA other downstream 2728708 11610318 ~ 11613123 (+)

Expression


Co-expression Network