G214990


Basic Information

Item Value
gene id G214990
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 8981914 ~ 8986115 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU291796
tttataattgctaattgtttgaaaatagctatattgaaactactctctggatatttggcctatcacctccatttcagtcttgctgcacactgtagagtctctaggtaaatgttcattaaaaacatttgtgaaaatttcacatacaatactctccaggcatcaagcaatctgtgcgtccttggaatttctaacctaaattgctgtaactctgcagtatttgctgtaatctcacaatgttaaagacctctgtacaatatcactctgatgaagcgccatttaatacagaactagattaagaataacttgacattacatgtcatatcagaacattcactcctttgtgcctcttctcaacattaataacaggtgaaagacttttgatcattttaaatgtgacagaatgtctccaattgtgttagaccttcttacacatcaccatcctatgctctagtaggcaccattgtgctagttggtgcttgatgaagcgccatttaattcagaactagatttataataacttcgtaattacatgtcatatcagaacatccactcctttgtgttattttaaacttgtttggtcaaacatttcagcttgttctgcaaaggttcaaaggtcaatctgaataccactttgtgaccattctggttgaagccacctgatcaataccaataacatgtagacaccttttgactagttctaactcacttaatgaatatcctacaaagttcactagatttacatgtgaatttaagcactgatcaggttgaaaggcctctgctcaacattaataacaggtgaaaaacttgataatttctaaatgtgacagggcatctccaatcatattagaccttcttacacatcaccattcaatgctccagtaggcaccattgtgcaagttggtgcttgaacccgatgattgccgcttgcggctatattttttA
>TU291797
tttataattgctaattgtttgaaaatagctatattgaaactactctctggatatttggcctatcacctccatttcagtcttgctgcacactgtagagtctctaggtaaatgttcattaaaaacatttgtgaaaatttcacatacaatactctccaggcatcaagcaatctgtgcgtccttggaatttctaacctaaattgctgtaactctgcagtatttgctgtaatctcacaatgttaaagacctctgtacaatatcactctgatgaagcgccatttaatacagaactagattaagaataacttgacattacatgtcatatcagaacattcactcctttgtgcctcttctcaacattaataacaggtgaaagacttttgatcattttaaatgtgacagaatgtctccaattgtgttagaccttcttacacatcaccatcctatgctctagtaggcaccattgtgctagttggtgcttgatgaagcgccatttaattcagaactagatttataataacttcgtaattacatgtcatatcagaacatccactcctttgtgttattttaaacttgtttggtcaaacatttcagcttgttctgcaaaggttcaaaggtcaatctgaataccactttgtgaccattctggttgaagccacctgatcaataccaataacatgtagacaccttttgactagttctaactcacttaatgaatatcctacaaagttcactagatttacatgtgaatttaagcactgatcaggttgaaaggcctctgctcaacattaataacaggtgaaaaacttgataatttctaaatgtgacagggcatctccaatcatattagaccttcttacacatcaccattcaatgctccagtaggcaccattgtgcaagttggtgcttgaacccgatgattgccgcttgcggctatattttttA
>TU291799
TTTGTGGTCACTATAAGCCAATCGCATTCCAGtaagcttttgacaggctaaatGTTAATCAGGTCAAAACTTATACactattattgatattattggttATTGATATGTGCCCTTTTATGCCTCACTGCTAGGCTCTCCGAATGCCCACTAGAGTgcagcaagagaccacataaaaccTGCTGAACACTACAGCACAATTTATCAATGCATTTCAACTAGTTTACTCACACCACTCATCTAGCATTgtcattatggtctttatggtcacgctGTTCACCTAGCTTGGTTATGCTGCCCAACCAGCTAGGTAATTCTGgtcattcacattggtcattatggtcctgctggtcattcagctttgtcatTATAGcaatgctggtcatccagcttggtcatactggccaaacacctttgccatgctggtcatccagtttggtgatGCCGGTCAACCAGCAACATGTTTTAAGCCTAACTGGCCTCCAGGGGCCTCTTTGACTGTAACGCTCGAACCCCGTAaatcgccgcttgcggctatatttattattattattattattattattctttttctcctgtaaaaacagttgtgcagcctaaaccgtaagtcatagagaaatgaaacttggtaggtagatgtaggatcagtgcatctcggtggacaacaaaaatggcaccgattggtcaagtggtggcgctatacaggaaattcattttttcacaattttctcaataactcaaaaaccataagacctacattcaaaattctttttttgatggattccttgggtcaataccaacaactttccaatttggaccatgcacttccgtctatatagactttgtgctaatttgcataatatgcaaaacctacttttgcaaactagtcctaggaattttgaccaatcctggcatgtttggtatcaaaacactcgtgagagcatgcgcttcaatattcattaagaaaaagttgaaatatgtaaacaatatggccgccatatgcaaattagtccttccggatatatgccccattcacttcaagaggtaaatttggagcactcagcaaccgtgcaacctagcaagttgaaactttgcatgcagaatctatcatacagcctctaaaggatgttcaaagggcaacttaatcaatcaacatggctgaacaccatcagccaatcagcattcagcagacattttggcaggctgaatcttgcccaatctggatgatatttggcagttatgttcaggtggagacactgtagtgacctgcaaagtgctgaaacaatccgcccactggggggcgctgttccaaaaaaacgagtatatgtcaatcatgctgtactattttgacatctaattgtttttgccatatttagtacagtggctctgacaaatttctcaatacaactatgtttaaaaagtgctttgttcattcataattgctaattgtttgaaaatagctatattgaaactactctctggatatttggcctatcacctccatttcagtcttgctgcacactgtagagtctctaggtaaatgttcattaaaaacatttgtgaaaaatttcacatacaatactctccaggcatcaagcaatctgtgcgtccttggaatttctaacctaaattgctgtaactctgcagtatttgctgtaatctcacaatgttaaagacctctgtacaatatcactctgatgaagcgccatttaatacagaactagattaagaataacttgacattacatgtcatatcagaacattcactcctttgtgcctcttctcaacattaataacaggtgaaagacttttgatcattttaaatgtgacagaatgtctccaattgtgttagaccttcttacacatcaccatcctatgctctagtaggcaccattgtgctagttggtgcttgatgaagcgccatttaattcagaactagatttataataacttcgtaattacatgtcatatcagaacatccactcctttgtgttattttaaacttgtttggtcaaacatttcagcttgttctgcaaaggttcaaaggtcaatctgaataccactttgtgaccattctggttgaagccacctgatcaataccaataacatgtagacaccttttgactagttctaactcacttaatgaatatcctacaaagttcactagatttacatgtgaatttaagcactgatcaggttgaaaggcctctgctcaacattaataacaggtgaaaaacttgataatttctaaatgtgacagggcatctccaatcatattagaccttcttacacatcaccattcaatgctccagtaggcaccattgtgcaagttggtgcttgaacccgatgattgccgcttgcggctatattttttA

Function

NR:

description
PREDICTED: extensin-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU291796 False 942 lncRNA 0.36 2 8983357 8986115
TU291797 False 942 lncRNA 0.36 2 8983357 8986115
TU291799 True 2372 lncRNA 0.39 2 8981914 8986115

Neighbor

gene id symbol gene type direction distance location
LOC103042822 si:ch211-120p12.3,LOC108434955,LOC108263591,LOC103372805,LOC107375814,LOC107676554,LOC107666507,LOC107552954 coding upstream 41369 8920468 ~ 8940545 (+)
LOC103040587 rgs17,LOC103040587,LOC108262465,LOC108434957,LOC107725462,LOC107552952 coding upstream 120481 8831245 ~ 8861433 (+)
phactr2 phactr2 coding upstream 332145 8540965 ~ 8649769 (+)
cog2 cog2,LOC107601846,LOC107725477,LOC107552949,LOC107666500,LOC107743537 coding upstream 451466 8514358 ~ 8530448 (+)
galnt2 galnt2,LOC107725470,LOC107676591,LOC107666462,LOC107743534 coding upstream 528096 8306242 ~ 8453818 (+)
LOC103044072 LOC108443735,LOC108263510 coding downstream 277524 9263639 ~ 9293642 (+)
kif1bp kif1bp,LOC107743600 coding downstream 446489 9432604 ~ 9440914 (+)
srgn srgn coding downstream 475215 9461330 ~ 9466106 (+)
vps26a vps26a,LOC107666532 coding downstream 482969 9469084 ~ 9480545 (+)
supv3l1 supv3l1,LOC107725491,LOC106612443,LOC107601833,LOC107666535 coding downstream 497483 9483598 ~ 9494529 (+)
G214988 NA non-coding upstream 1506 8979328 ~ 8980408 (+)
G214986 NA non-coding upstream 3134 8978409 ~ 8978780 (+)
G214947 NA non-coding upstream 100304 8878358 ~ 8881610 (+)
G214942 NA non-coding upstream 140431 8838554 ~ 8841483 (+)
G214881 NA non-coding upstream 258916 8718823 ~ 8722998 (+)
G215011 NA non-coding downstream 82880 9068995 ~ 9069867 (+)
G215039 NA non-coding downstream 301961 9288076 ~ 9310173 (+)
G215094 NA non-coding downstream 480505 9466620 ~ 9468399 (+)
G215102 NA non-coding downstream 495200 9481315 ~ 9481538 (+)
G215103 NA non-coding downstream 495557 9481672 ~ 9482581 (+)
G214773 NA other upstream 870589 8110948 ~ 8111325 (+)
LOC103021346 LOC108412479 other upstream 1104796 7856162 ~ 7877118 (+)
pold4 NA other upstream 1168878 7810978 ~ 7813036 (+)
LOC111196031 NA other upstream 2572846 6399076 ~ 6409068 (+)
G214175 NA other upstream 2697546 6283781 ~ 6284368 (+)
sprn sprn other downstream 1589380 10575495 ~ 10583088 (+)
G215513 polr1b other downstream 1960964 10947079 ~ 10948287 (+)
cpeb3 cpeb3,LOC106604870 other downstream 2139585 11125700 ~ 11195423 (+)
LOC111195936 NA other downstream 2624203 11610318 ~ 11613123 (+)
G215834 NA other downstream 3219386 12205501 ~ 12206164 (+)

Expression


Co-expression Network