G215215 (fam35a)


Basic Information

Item Value
gene id G215215
gene name fam35a
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 9787152 ~ 9788616 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU292118
CCGGTAGCACTACTGTAGGTTAATCATCAGTAAGTAAATATCAGATATGTCAAATATGACAGAAATGATTAAGGAAGAAGAACAGGAAGATCTTTTTGATCATTTGATGCCTCACCTACAGGCTTGTTCAGCTTGTCTGGTGGGGTGTCAAGCAGGATCTTTTGCAAAAGAGTGGGTGGAACTTGTACACACACTTGACgatctccctctctcacagTCAGAACAGCTGGTCTGTAGTAGCGGCGTACTCCAGTATGAGGCAGGCAGGGGTAGCAGGGTCTGTAGATTCCGTTCTCATCCGTGTCCAGCTCAGCACAGCACAGGCCACAGCCAGTGAAAGTGATGTCACCACACACAACCTCCAGAACTTTCTCCAGAGACATCTCTCGATCCATGAGCTGCACTGCATCCTGCGACGGGCTGCTCTGAAACTGGACAGCAGTGATTTGAGCGTTCAGCTC

Function

NR:

description
PREDICTED: protein FAM35A isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU292118 True 461 lncRNA 0.49 2 9787152 9788616

Neighbor

gene id symbol gene type direction distance location
LOC103028294 LOC108438200 coding upstream 27270 9696027 ~ 9759882 (+)
rufy2 rufy2,LOC107676589,LOC107743555,LOC107725492,LOC107563060 coding upstream 108095 9660500 ~ 9679057 (+)
cfap43 NA coding upstream 133300 9632391 ~ 9653852 (+)
tspan15 NA coding upstream 172510 9565948 ~ 9614642 (+)
hk1 hk1,LOC107676584 coding upstream 244181 9524819 ~ 9542971 (+)
glud1 glud1,glud1a,gdh01,LOC103026661,LOC108438199,LOC107743560,LOC107563055,LOC107725450 coding downstream 12080 9800696 ~ 9817693 (+)
mmrn2 NA coding downstream 68760 9857376 ~ 9886745 (+)
LOC103041708 LOC108438182,LOC108263627,LOC107565930,LOC107666514,LOC107713893,LOC107696877,LOC107743575,LOC106606775 coding downstream 741013 10529629 ~ 10555221 (+)
LOC103041404 NA coding downstream 773798 10562414 ~ 10572740 (+)
dna2 dna2,LOC107743557,LOC107601826 coding downstream 806714 10595330 ~ 10612761 (+)
G215199 NA non-coding upstream 24904 9760288 ~ 9762248 (+)
G215197 NA non-coding upstream 91879 9694917 ~ 9695273 (+)
G215103 NA non-coding upstream 304571 9481672 ~ 9482581 (+)
G215102 NA non-coding upstream 305614 9481315 ~ 9481538 (+)
G215094 NA non-coding upstream 318753 9466620 ~ 9468399 (+)
G215224 LOC107601818 non-coding downstream 30648 9819264 ~ 9890322 (+)
G215236 bmpr1aa,LOC108438195,LOC107666410,LOC107696892 non-coding downstream 102206 9890822 ~ 9891888 (+)
G215245 NA non-coding downstream 126771 9915387 ~ 9915917 (+)
G215287 NA non-coding downstream 196568 9985184 ~ 9985469 (+)
G215294 NA non-coding downstream 252591 10041207 ~ 10041714 (+)
LOC103041196 LOC108443732,LOC107582026,LOC107601840 other upstream 756554 8958299 ~ 9030598 (+)
G214773 NA other upstream 1675827 8110948 ~ 8111325 (+)
LOC103021346 LOC108412479 other upstream 1910034 7856162 ~ 7877118 (+)
pold4 NA other upstream 1974116 7810978 ~ 7813036 (+)
LOC111196031 NA other upstream 3378084 6399076 ~ 6409068 (+)
sprn sprn other downstream 786879 10575495 ~ 10583088 (+)
G215513 polr1b other downstream 1158463 10947079 ~ 10948287 (+)
cpeb3 cpeb3,LOC106604870 other downstream 1337084 11125700 ~ 11195423 (+)
LOC111195936 NA other downstream 1821702 11610318 ~ 11613123 (+)
G215834 NA other downstream 2416885 12205501 ~ 12206164 (+)

Expression


Co-expression Network