LOC111195963 (LOC100707324,LOC106606853)


Basic Information

Item Value
gene id LOC111195963
gene name LOC100707324,LOC106606853
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 10141138 ~ 10157300 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU292242
tagatagatagatagataaagatttCCATTTTTAAGTTAACACAGACAGTGAAAAATATTACCAGAGTAGACATGCATATTTTTCCTCCTTCTGTCCAACTGCATatatggtttggtttgttgtttAAGTGagtggcctttttttttttctttttcttttaaacatcACTTCATTTCAGCGTTGAAAACAGCCATTTTTCCATTACCTTGAGAATGCaggtaacatatatatatatatagatagatagatagatagataaagatttCCATTTTTAAGTTAACACAGACAGTGAAAAATATTACCAGAGTAGACATGCATATTTTTCCTCCTTCTGTCCAACTGCATatatggtttggtttgttgtttAAGTGagtggccttttttttttcttttctttttttccttttttgagtTATTTCGGTTGGCGTATCGTAAGTTCTCCCTCTTATCGCAAGCTACGTAACATAAGAACATATTTTTCCCCTTTATAAAACGCTctgcattgtatttttttttaaggtgacCATTCCTTATGGCTGTGTGGAGACACTAGGATGAGAGAGAAGGGCGGGCCTCAGAGGACAGGGCAACGAAGTCAGAAGAGACGCTACTCGGACGACATCACACTGGAACTGTACAAGCACTGCACCAGGGCCCAAAAAGGAAACTGATGGGGCGGAAAGGTGTCACAGTGCCTCACTGGGTGTTCTGTGGTGAGTTAGATATGTTCGATATATACAACTGAATCTTTCCTTTTACCATTTTTCTTATCCTTTTCTTCCATCAGATGAATCTTGTCTACTCGCAGCCATACTAATTACTGCTAAATACAATGAAAGGAGCATAACGGCTTAGAACAAAGTGAACAGCGTATGCATTAAGCCTTTCCCGCATGGGGTCACTGATATTATTCACGTTTCTACTTTTTGACCACAGTGAAAATAAGCAGTATTCATgtcacacagatatacacacacacagatatgccTTAAAGGGAGAACACTGTGTCATGTGAGCATTGAACACACAACCACACGTCTCGTTTGCTTTGTGAACGTGCATTTTACAGCATGATCCATGATTTTACCTATTTCACCAGTGCACTGGAAGTCCATGAGCATGTGTTTTTAGGGATGAAGACGGACAAAGTGGGCGTGTGCAAAATTGGCACAGCCTAGGCTCCACCCACAACTACAAAGGGCAACGGGCACtgcattagtatttacaaaaacaaacgaaacaaaaaacaaaaatatatgacCCAGAAAATACACCAACACTAAGAACACTAACATTAGAACATTACAACACAAACTGCCACAAAAGGGGCCAATAAACCCAACAGCCTTTCAGCATGACCTGGACTCactgctcttagctcctccccctTTCTCTCCCAAGTCAGACTCAGAACTTCCATATCCTGAGTCACCCTCCatccttccttctttcttccTCAGGACTAACCTGCTCAGGCACTGCTCACAGTGAGCGAACAGACGGAACGACACGGACAGGACCAGACCTCGGACAGCAGACAGCAGGCAAGTGTGCAGGACAGACCAACACAGTGGGGGTGGGAAGGGTGTAATGGGGTTGCACGGGCTGGTGTCAGGGTCCCCTTTGGAGAAAGAACCTGTCGGAGAGGGCTTTCATAACCTGAAGTTGCAGAAAAGTCCACGAGGAGTGAACGGAACAGCATAGCATCTCAGGCTAATGTGCAAAACAGTACAGGccatttcaattcaattcaatccaAACATGCTTTGAacagtatagaaaaaaaacaaatgatatGCACAAGAGGCCGGAGCCctgggaaagtgagagagagacagagagagagaagggggcaCTAAAAGACGATGTATGTGAGAGTAGTGTTTAGCCCCCCCTGGCAGGCAGAAGACGAAGGTGTGCTCAGAACACACTGATAAATTGAAGGGAGCGTTCTGCAACTTCAGGTTCTGAGGACTCCGGTATCACACCTGCCAACAAGCAGACAAACAAGCAGACAGGCCAAGTGACCCAGCCCATGTTTGTGTTCTcggtagctgtgtgtgtgtgttggtgtgtatatAGATAGACATGTACATGTGCTTCTTAAAGCACAACAGAGCCAACAggctaaactaaataatacacacattcacacacacacacaaacatgctcacacccCCTCGAAAGCTCTCAAAAGTTCCCTTTACACAGACACTAAAatcattttttgtctttttttcccttctctTTATAAATATCTATGTATACACAACTATTAAACCGTGCCCCGCTTTTAAAAATcagcttcttttttttgaaaacacaaaatacttttaaatacagCATTATTCAGGAGATAAAAACCAAGAGTTccacaaaataacacaaaaatacttaaaaaaaaaaaaaaataaaaataataataaccgtCCTCACAGCTTCCCTCCTTTTatcaaacagaataaaaaatattgttaaaacaACTTCTGGTTGATGCCTAAATTCTACACTTTGGTAGCTTTACTCATGATAATAAGCAAAGTTTTAGTTTAGCCCCTCAAATATCCCACTCCTCACGTGACATTGCATCCAAACAAGACttatacatgtttaaaaaaaaaagaaaaaagaaacaaaggcagaaaaaaacaaaactaaccaaaaaaaaaaaaaaacaccatccaCTGAAACAGTGGGTTCTCCTTTTCACTATTTCACATTTCAGATTTGAAACTGCCATCACTTTCAGCCCTGTTAATAGTGTGAGGATCAACAATCTCGATATTTTACAACAGATTAATACTTTAAACACTCTTTCCGAACGACGGGCAGAAAAGATGGGATCATGGGCAAAAAGGACAAGACAGCGCCCCCTTTGGGCATCAGAAGCATGCAGCATCCGGAGGGCGGGGCCACTTGCCACAGCCGGCCCCCACGTCTAGCTACGGTAGGACTGAAGTGGTGGTGGCCACAGTTGGctttcaattttttatttaattttttttttaacttggttgcgttattttttcccccctcaTGTTTTCTCTTCAGGCCGGGCTCCTGGCGCCAATCCAGCCACCGAGAAGAAATGCTCCAATTATCCAGGTAAGCTGAAAGAGAGACATTTACATGTTGACAATTAACTGAtgatttttgtataaaaaaagacGTAAACAGTCCTCCTTTAGCAATGTAAGAGCTTTGCTTAGGGACAGAATGAAAAAATCTTAAATCAAACTATTCAACAAAATTGCCATTGGTCATCAAGGACCTGTaacagagcatttatttaaagttgtgTGGAAGTTATGGGTTCATGTTAATCAAAAACTGCTTGTGTACTGActtgcagtgtgtgtttggtggtaCCTGTGCCTGGTTTGGTTCACTGTAAAGGTGCAGCAGGTGCTCCTGAGCAGTGGAAGTGCACGTTGAGCCATTTAGCATCGCGGCGGTGCCACACACGAGTCTCTTCTGACTGGCAGCTACGCGGACGGCCCTGGCTGTCGATGTACTGCGTCAGACGGATGTATGCAATGCAGGCTGCGTCCTCTCCGATCAGGTGCACGTGTGGATTCAAGATGGTGGTGTGCACTGGCTTGCTGTTCTTACTCAAG
>XR_002651897.1
GGAGAAGGAGCTCGTTGCACCAGAACTACCGACTGGAAGCCAGCCGGTGTCCTGACACATGTGTAAAGGAGTAAATTGGCAAAGGAAAAtggacagtgggtggtaatgattgtgaccggcggcATTTGGCTACAACTGTCTGTGCaaacacatccacattcaatgcaggaaacCCCACATATCCATCAGGTAGGAAAAGTATTAGGGAGCAAGTGAACAGTCGATTCCTGAAGTTGATGAGGtggaatcagaaaaaaatgggtgacCATTCCTTATGGCTGTGTGGAGACACTAGGATGAGAGAGAAGGGCGGGCCTCAGAGGACAGGGCAACGAAGTCAGAAGAGACGCTACTCGGACGACATCACACTGGAACTGTACAAGCACTGCACCAGGGCCCAAAAAGGAAACTGATGGGGCGGAAAGGTGTCACAGTGCCTCACTGGGTGTTCTGTGGTGAGTTAGATATGTTCGATATATACAACTGAATCTTTCCTTTTACCATTTTTCTTATCCTTTTCTTCCATCAGATGAATCTTGTCTACTCGCAGCCATACTAATTACTGCTAAATACAATGAAAGGAGCATAACGGCTTAGAACAAAGTGAACAGCGTATGCATTAAGCCTTTCCCGCATGGGGTCACTGATATTATTCACGTTTCTACTTTTTGACCACAGTGAAAATAAGCAGTATTCATgtcacacagatatacacacacacagatatgccTTAAAGGGAGAACACTGTGTCATGTGAGCATTGAACACACAACCACACGTCTCGTTTGCTTTGTGAACGTGCATTTTACAGCATGATCCATGATTTTACCTATTTCACCAGTGCACTGGAAGTCCATGAGCATGTGTTTTTAGGGATGAAGACGGACAAAGTGGGCGTGTGCAAAATTGGCACAGCCTAGGCTCCACCCACAACTACAAAGGGCAACGGGCACtgcattagtatttacaaaaacaaacgaaacaaaaaacaaaaatatatgacCCAGAAAATACACCAACACTAAGAACACT

Function

NR:

description
PREDICTED: calcium/calmodulin-dependent protein kinase type II subunit gamma isoform X21

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU292242 True 3619 lncRNA 0.42 2 10153448 10157300
XR_002651897.1 False 1032 lncRNA 0.44 4 10141138 10154972

Neighbor

gene id symbol gene type direction distance location
mmrn2 NA coding upstream 254393 9857376 ~ 9886745 (+)
glud1 glud1,glud1a,gdh01,LOC103026661,LOC108438199,LOC107743560,LOC107563055,LOC107725450 coding upstream 323445 9800696 ~ 9817693 (+)
LOC103028294 LOC108438200 coding upstream 381256 9696027 ~ 9759882 (+)
rufy2 rufy2,LOC107676589,LOC107743555,LOC107725492,LOC107563060 coding upstream 462081 9660500 ~ 9679057 (+)
cfap43 NA coding upstream 487286 9632391 ~ 9653852 (+)
LOC103041708 LOC108438182,LOC108263627,LOC107565930,LOC107666514,LOC107713893,LOC107696877,LOC107743575,LOC106606775 coding downstream 372329 10529629 ~ 10555221 (+)
LOC103041404 NA coding downstream 405114 10562414 ~ 10572740 (+)
dna2 dna2,LOC107743557,LOC107601826 coding downstream 438030 10595330 ~ 10612761 (+)
kmo kmo,LOC106930458,LOC106526537 coding downstream 471119 10628419 ~ 10653984 (+)
LOC103037124 rmdn2,LOC108413000,LOC107747293,LOC107665610 coding downstream 700106 10857406 ~ 10884537 (+)
LOC111195964 NA non-coding upstream 548 10112224 ~ 10140590 (+)
G215315 NA non-coding upstream 3016 10132580 ~ 10138122 (+)
G215296 NA non-coding upstream 11400 10128748 ~ 10129738 (+)
G215309 NA non-coding upstream 66508 10074202 ~ 10074630 (+)
G215294 NA non-coding upstream 99424 10041207 ~ 10041714 (+)
G215350 NA non-coding downstream 106237 10263537 ~ 10264736 (+)
G215397 NA non-coding downstream 344411 10501711 ~ 10507072 (+)
G215411 NA non-coding downstream 473156 10630456 ~ 10633037 (+)
G215419 NA non-coding downstream 496827 10654127 ~ 10654340 (+)
G215420 opn3 non-coding downstream 499895 10657195 ~ 10657634 (+)
LOC103041196 LOC108443732,LOC107582026,LOC107601840 other upstream 1110540 8958299 ~ 9030598 (+)
G214773 NA other upstream 2029813 8110948 ~ 8111325 (+)
LOC103021346 LOC108412479 other upstream 2264020 7856162 ~ 7877118 (+)
pold4 NA other upstream 2328102 7810978 ~ 7813036 (+)
LOC111196031 NA other upstream 3732070 6399076 ~ 6409068 (+)
sprn sprn other downstream 418195 10575495 ~ 10583088 (+)
G215513 polr1b other downstream 789779 10947079 ~ 10948287 (+)
cpeb3 cpeb3,LOC106604870 other downstream 968400 11125700 ~ 11195423 (+)
LOC111195936 NA other downstream 1453018 11610318 ~ 11613123 (+)
G215834 NA other downstream 2048201 12205501 ~ 12206164 (+)

Expression


Co-expression Network