G215487


Basic Information

Item Value
gene id G215487
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 10822389 ~ 10827352 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU292488
cattgtgtgtgtgctcttaaaGTAAAACTACACCGGAAGGGTGGGAGGGAGCGCTTCACACTGCTCTCTGGttcaatgaagtcTGCGCAAATGGCCGTATTTTTCTCCTATCGTTCGTCTGGTGTACGTCAATAGCATCCAGAAGAACAGAGGGTCAGCCTGAGGTTCCTTGGATGTCTCACTACCGTCCAGGCCCCCTGTAACTCGCAGAGGAATtCTGGGTGCAGCTGTAATGGAGGGTAAGGAGCAGAGAAAGCCTGAAATAGCTGAGGGTGTGTAGGCAGAGGCCTGACCACTGGCATGCATAAGGAAACAGCCTCCACGgttctcctccacacacagcaGTAGCAGAAGCAGAGCTGTACACAGGCCAGGGGCCCACATGCGAGTCCACAGTCCAACCCCACCCTCCACTATTCCAGTCCTGGTGCTTCACTACAGCTGCTCTGTTCTCCCAGAGGAACCAGAGGAACCACCAACATGGGCATCAAGAAACTGTAGAGGAATGACACTTTAAAATGTATGCagtaatatattacatattatattggttttattcatttaaatgattattCCTGAATTAAAAAGAGATAGTTTGGTACCTCGCAAGTTCCAACTTTTTTAGTActtttgcattgc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU292488 True 639 lncRNA 0.48 3 10822389 10827352

Neighbor

gene id symbol gene type direction distance location
kmo kmo,LOC106930458,LOC106526537 coding upstream 168405 10628419 ~ 10653984 (+)
dna2 dna2,LOC107743557,LOC107601826 coding upstream 209628 10595330 ~ 10612761 (+)
LOC103041404 NA coding upstream 249649 10562414 ~ 10572740 (+)
LOC103041708 LOC108438182,LOC108263627,LOC107565930,LOC107666514,LOC107713893,LOC107696877,LOC107743575,LOC106606775 coding upstream 267168 10529629 ~ 10555221 (+)
mmrn2 NA coding upstream 935644 9857376 ~ 9886745 (+)
LOC103037124 rmdn2,LOC108413000,LOC107747293,LOC107665610 coding downstream 30054 10857406 ~ 10884537 (+)
nanp NA coding downstream 116065 10943417 ~ 10945887 (+)
LOC103035683 LOC103035683 coding downstream 130907 10958259 ~ 10965557 (+)
LOC103034849 LOC103035683 coding downstream 139700 10967052 ~ 10970878 (+)
LOC103035174 LOC108426875 coding downstream 144633 10971985 ~ 10980486 (+)
G215423 opn3,LOC107549142,LOC107665579,LOC107586115,LOC107747290 non-coding upstream 159122 10662951 ~ 10663267 (+)
G215421 opn3 non-coding upstream 163136 10659006 ~ 10659253 (+)
G215420 opn3 non-coding upstream 164755 10657195 ~ 10657634 (+)
G215419 NA non-coding upstream 168049 10654127 ~ 10654340 (+)
G215411 NA non-coding upstream 189352 10630456 ~ 10633037 (+)
G215517 polr1b non-coding downstream 125379 10952731 ~ 10954727 (+)
G215562 prdx3,LOC107666469 non-coding downstream 172006 10999358 ~ 10999999 (+)
G215564 NA non-coding downstream 190058 11017410 ~ 11020058 (+)
G215573 NA non-coding downstream 254199 11081551 ~ 11083904 (+)
G215574 NA non-coding downstream 258057 11085409 ~ 11086473 (+)
sprn sprn other upstream 239301 10575495 ~ 10583088 (+)
LOC103041196 LOC108443732,LOC107582026,LOC107601840 other upstream 1791791 8958299 ~ 9030598 (+)
G214773 NA other upstream 2711064 8110948 ~ 8111325 (+)
LOC103021346 LOC108412479 other upstream 2945271 7856162 ~ 7877118 (+)
pold4 NA other upstream 3009353 7810978 ~ 7813036 (+)
G215513 polr1b other downstream 119727 10947079 ~ 10948287 (+)
cpeb3 cpeb3,LOC106604870 other downstream 298348 11125700 ~ 11195423 (+)
LOC111195936 NA other downstream 782966 11610318 ~ 11613123 (+)
G215834 NA other downstream 1378149 12205501 ~ 12206164 (+)
G215886 NA other downstream 1883286 12710638 ~ 12715905 (+)

Expression


Co-expression Network