LOC111195984


Basic Information

Item Value
gene id LOC111195984
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 11737601 ~ 11739399 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU292794
gtaggagtgtgtgtgtatgtgtgtgtgtctgggttcATCCTGGTCTAAGAGGCCTTGCCTGAGACCTTGAGCTTTGTTGAAGCAGCATGAGAGCGTAGATTCTCTCTGGTCTgggagagcgagcgagcgagagaccCTGAGAGATAAGATACTTTCCAGCCATCAGAGAACATCCCGTCCCGAAACGTCTCCCTCATATCTCCCTCTCACTAGACCTCTGACGGCCGAAACATGAGATAGCGCATCATCTGCCCTCAGGAAGGAGACTTTGCCATTCAGTGGAGTGGGCCCCATCCCCAGCCCTGGCCCTGGATCCAACCAATCACTCACCAGCATGGCACGGGCCTGCCCGTTAGCAGCAGGCCAACATTGTTTAcaatgagttttgtgttttgtgcagAGCTCATATCCGGGAGGTGCAGGTGCTAGAGGAGGCTCCAGCCCAACAGAagaagcaggaggaggaggaggaggaggaggaagaagaagaggaggaggaggctgaAAGTGGTGAACGCTGGTGGAGAAAACAGTTACTCTGTCTTCCTTAAACATCTTCAAGGTCTCTGGAGAGGAATAAATTCCCAAGAGAGACAGTTTCCTGCAAGGAGATGGCCCCAGCGATGGAACAGTTCTTCCCGAGTTCACCTGGCACCGTGCCCTCATGCTCGCTGTTCCTTTTTCCTATGCATATAACTCTTTGAGAAGTAGCATTAAAGAGGCATAGGGCATGGGAAAATGGGGCTGCAGAGGTATTCCACTGAAGCGTTCCCACACCACCACATCCACCACCACCAACGCCGCCGCCTCTCCAACAAAGCAGCGGCTGTATAAACTGTGTTTACACGTCTCCAGTGCTTTCATGCTCTGCCATTCTTCCCAAAGGATTAAACACTATTAGATGCAGTTTATTACTGTTATCAGTTTAATTGGTTTAGTTTGTAATATGGATGGATTTTTCTGAGAGTAAGCTGTGATGGTGTGATCTTGTGAAGTGAAGAGTTAATTGAAATGTGAATCTAAACTGTGTAATCTACTGTCTGCTGTGATTTAATAAAGACACTGACTGAACTGAAAACACTTTTATCTCTGTTTGGTTTTTATTCCCT
>XR_002651922.1
CACTAGACCTCTGACGGCCGAAACATGAGATAGCGCATCATCTGCCCTCAGGAAGGAGACTTTGCCATTCAGTGGAGTGGGCCCCATCCCCAGCCCTGGCCCTGGATCCAACCAATCACTCACCAGCATGGCACGGGCCTGCCCGTTAGCAGCAGGCCAACATTGTTTAcaatgagttttgtgttttgtgcagAGCTCATATCCGGGAGGTGCAGGTGCTAGAGGAGGCTCCAGCCCAACAGAagaagcaggaggaggaggaggaggaggaggaagaagaagaggaggaggaggctgaAAGTGGTGAACGCTGGTGGAGAAAACAGTTACTCTGTCTTCCTTAAACATCTTCAAGGTCTCTGGAGAGGAATAAATTCCCAAGAGAGACAGTTTCCTGCAAGGAGATGGCCCCAGCGATGGAACAGTTCTTCCCGAGTTCACCTGGCACCGTGCCCTCATGCTCGCTGTTCCTTTTTCCTATGCATATAACTCTTTGAGAAGTAGCATTAAAGAGGCATAGGGCATGGGAAAATGGGGCTGCAGAGGTATTCCACTGAAGCGTTCCCACACCACCACATCCACCACCACCAACGCCGCCGCCTCTCCAACAAAGCAGCGGCTGTATAAACTGTGTTTACACGTCTCCAGTGCTTTCATGCTCTGCCATTCTTCCCAAAGGATTAAACACTATTAGATGCAGTTTATTACTGTTATCAGTTTAATTGGTTTAGTTTGTAATATGGATGGATTTTTCTGAGAGTAAGCTGTGATGGTGTGATCTTGTGAAGTGAAGAGTTAATTGAAATGTGAATCTAAACTGTGTAATCTACTGTCTGCTGTGATTTAATAAAGACACTGACTGAACTGAAAACA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU292794 True 1109 lncRNA 0.49 2 11737601 11739399
XR_002651922.1 False 873 lncRNA 0.48 2 11737808 11739370

Neighbor

gene id symbol gene type direction distance location
LOC103039507 LOC108426770,LOC108262815,LOC107720583,LOC107686529,LOC107750130,LOC107565063,LOC107562391 coding upstream 37189 11628166 ~ 11700412 (+)
dntt dntt coding upstream 204075 11387036 ~ 11533526 (+)
LOC103038673 NA coding upstream 464623 11262619 ~ 11272978 (+)
ide ide,LOC107665588 coding upstream 657727 11044038 ~ 11079874 (+)
sfxn4 NA coding upstream 703725 11027680 ~ 11033876 (+)
cfap46 NA coding downstream 498972 12238371 ~ 12246879 (+)
nkx6-2 nkx6-2,nkx6.2,LOC106576777,LOC106605004,LOC107745024 coding downstream 511435 12250834 ~ 12253561 (+)
stk32c stk32c,LOC102790870,LOC107670801 coding downstream 811907 12551306 ~ 12679668 (+)
LOC103045242 LOC103045242,LOC108426851,LOC108262946 coding downstream 956725 12696124 ~ 12705188 (+)
atp5s atp5s coding downstream 1234212 12973611 ~ 12979567 (+)
LOC111196005 NA non-coding upstream 127288 11607475 ~ 11610313 (+)
G215698 NA non-coding upstream 196070 11541208 ~ 11541531 (+)
G215595 NA non-coding upstream 514201 11201965 ~ 11223400 (+)
G215577 march5,LOC107549154,LOC107747250,LOC107719203 non-coding upstream 612057 11090351 ~ 11125544 (+)
G215582 NA non-coding upstream 631811 11105213 ~ 11105790 (+)
G215725 NA non-coding downstream 72260 11811659 ~ 11846931 (+)
G215771 NA non-coding downstream 360386 12099785 ~ 12100670 (+)
G215843 NA non-coding downstream 516463 12255862 ~ 12258135 (+)
G215880 NA non-coding downstream 1025907 12765306 ~ 12768025 (+)
G215926 NA non-coding downstream 1180901 12920300 ~ 12922979 (+)
LOC111195936 NA other upstream 124478 11610318 ~ 11613123 (+)
cpeb3 cpeb3,LOC106604870 other upstream 542178 11125700 ~ 11195423 (+)
G215513 polr1b other upstream 789314 10947079 ~ 10948287 (+)
sprn sprn other upstream 1154513 10575495 ~ 10583088 (+)
LOC103041196 LOC108443732,LOC107582026,LOC107601840 other upstream 2707003 8958299 ~ 9030598 (+)
G215834 NA other downstream 466102 12205501 ~ 12206164 (+)
G215886 NA other downstream 971239 12710638 ~ 12715905 (+)
G216053 nin other downstream 1352347 13091746 ~ 13104042 (+)
LOC103038358 NA other downstream 1568638 13308037 ~ 13312487 (+)
trnay-gua_10 NA other downstream 1575713 13315112 ~ 13315200 (+)

Expression


Co-expression Network