G215725


Basic Information

Item Value
gene id G215725
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 11811659 ~ 11846931 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU292802
CGGCTCTTTAATTAACTGAATCGGTTCAGTAATTGAACCAAACGGCCAATCAGTAGCGTGGTAGCGGCGTCCATGACCTTTGGAGCAGCAGCGTGGCTAAACAACCCCACCACAGTTCAgtTTCCTTCGGAAGAGGGGTCCCACCGGTGGATTTTCCTGTTGGGGCAAAGACAGACATCACCTCCCAACTGAACCCATTTGGATCCACACCTTCTCGAAGCTAGGGACAAGAGGAATGTGTGTGATGATGCTGGGCCCCACTGTCTCTCACTGGAGAATGTTGACACGGACTGCTGAGCCAGCTGAAGATGCTGACATGATGAACTGGACCACACTGCAGTTTTCCAACATAAAGTACACAAGTACACCTCCAAAATGACAACTGCGTTGCAGAGGAAGACGAAGATGATGGGCTGACCAAGTATGGTTGCGGACCTAAACCCCGATGAGCATTTGTCGGTCATCCCTAAAGGAAAGTTGGGAAAGCGTGGGGTTTCCAACATTCACCAGCTCTGTGATGTCGTGGAAGAGGATTCCACAGTGTCAAACCTGTGCAGCTACTGTGAACTACAAGAGAGTAAAGGCAGTGCTGAAAATCATAGTGAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU292802 True 606 lncRNA 0.50 4 11811659 11846931

Neighbor

gene id symbol gene type direction distance location
LOC103039507 LOC108426770,LOC108262815,LOC107720583,LOC107686529,LOC107750130,LOC107565063,LOC107562391 coding upstream 111247 11628166 ~ 11700412 (+)
dntt dntt coding upstream 278133 11387036 ~ 11533526 (+)
LOC103038673 NA coding upstream 538681 11262619 ~ 11272978 (+)
ide ide,LOC107665588 coding upstream 731785 11044038 ~ 11079874 (+)
sfxn4 NA coding upstream 777783 11027680 ~ 11033876 (+)
cfap46 NA coding downstream 391440 12238371 ~ 12246879 (+)
nkx6-2 nkx6-2,nkx6.2,LOC106576777,LOC106605004,LOC107745024 coding downstream 403903 12250834 ~ 12253561 (+)
stk32c stk32c,LOC102790870,LOC107670801 coding downstream 704375 12551306 ~ 12679668 (+)
LOC103045242 LOC103045242,LOC108426851,LOC108262946 coding downstream 849193 12696124 ~ 12705188 (+)
atp5s atp5s coding downstream 1126680 12973611 ~ 12979567 (+)
LOC111195984 NA non-coding upstream 72260 11737601 ~ 11739399 (+)
LOC111196005 NA non-coding upstream 201346 11607475 ~ 11610313 (+)
G215698 NA non-coding upstream 270128 11541208 ~ 11541531 (+)
G215595 NA non-coding upstream 588259 11201965 ~ 11223400 (+)
G215577 march5,LOC107549154,LOC107747250,LOC107719203 non-coding upstream 686115 11090351 ~ 11125544 (+)
G215771 NA non-coding downstream 252854 12099785 ~ 12100670 (+)
G215843 NA non-coding downstream 408931 12255862 ~ 12258135 (+)
G215880 NA non-coding downstream 918375 12765306 ~ 12768025 (+)
G215926 NA non-coding downstream 1073369 12920300 ~ 12922979 (+)
G215921 LOC108426848,LOC101069491,LOC101071647 non-coding downstream 1090527 12937458 ~ 12963981 (+)
LOC111195936 NA other upstream 198536 11610318 ~ 11613123 (+)
cpeb3 cpeb3,LOC106604870 other upstream 616236 11125700 ~ 11195423 (+)
G215513 polr1b other upstream 863372 10947079 ~ 10948287 (+)
sprn sprn other upstream 1228571 10575495 ~ 10583088 (+)
LOC103041196 LOC108443732,LOC107582026,LOC107601840 other upstream 2781061 8958299 ~ 9030598 (+)
G215834 NA other downstream 358570 12205501 ~ 12206164 (+)
G215886 NA other downstream 863707 12710638 ~ 12715905 (+)
G216053 nin other downstream 1244815 13091746 ~ 13104042 (+)
LOC103038358 NA other downstream 1461106 13308037 ~ 13312487 (+)
trnay-gua_10 NA other downstream 1468181 13315112 ~ 13315200 (+)

Expression


Co-expression Network