G215843


Basic Information

Item Value
gene id G215843
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 12255862 ~ 12258135 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU292937
TCAGGTCTAATGGGGTTTTATTGCTTGAGGAGGTCACGGCATCCACGGAGCTCCATCTCTATGTGCTTTACAGGAAGCAGTGAGCggaggaagaagaaaagagtTTAACGTTTAACGAGCAGATTCGTCTAAGCACAGCATTGCCAAGACCACACATGCTATCGTTTCCACTTGTGGTGATTCAAATGAggaggaataaaataaaataaaataaaaaataataataaaaatcacattccaaaaaaatccattatCAGTGTAGCTCCTCCACGGGCTTCCTCCGTGAACTCTGTAGTGTAGTAAAGAGAAATCAATAGAAAGAAACGTGACGCCGATTCCTCAGCAGCCTCTGCTACTAACGAAGCACTAACGAGGCGATGATCTGGCAACCTAGAGAAAAGCCTGCAGCCTACATGGAAAATCGCAGAGATCtccttctctgtgttttcacCAGAGGTGGGTAGTAACTACAGATACATTTACTCCAGTAGAACTGTCACGGGCTTGTACTTTCCTGAgaattttaaacaataatacttttttaaatatacccAAATATATTTAGgaataataaaactaatttaagCTTTTGGTTACTTTCCTTTTCTGATTGGCCACACTTTCTATTTGAAGGTTAAGCAGTtcagtatttaatatttcagaTCTAAATGACCCAAATAAGATGAGATAAAACACACTTCATTTCCTATGTTAACAGATACTGCATGTATTACTATGTTCCGCTTCAGTTCTACAGAGAACTTTACACAAAGTCTTCTCAACTTCTACCCAAGATACTTCCACTATCTAATCTATTgtactatttactattttatagCTTGACTACTTATACTCGAGTTTTGTTTAGGCTATTCTACCCACCTCTgcttttttcacttattttcagCCTTGTCTTTCTATTCCACTGCACAACTGGCATGGCAACTCTTACTCAAAACTGTGTACAATACTTGGCACCATGATgcagtaacaaaaaaataaaaaaataaagaagaaaaacaaaaaaatacattttaaagatacCCAAGTCTACCTAAAACATCACATTCAGAACCATAATATTATTACACAGAAATAAGttagaataagaataataatgaaataaaccaagTGAGACTgctatataaaacaaaaccttATATACTTTGCATGGTCTTATGGCACTGGTTAAAATAGCTTTGATAGGCTATATATAAGTCATATGACTGAAAAAGGTGCACTTCAGATGATGatattttgttgtcttttttttccccatttgcGATTTAGCTATTCGGTTACATCAGATGACAGAACACTCAAGCAGTTGTCTCGCATTCATATTTCAGCATAACAATTTTGGTAAGAATTATAAATTATCTCGTTTAAAAAGTACAGTTTATAAAATGAGACTCGGTGGATGTCAAAGGCATGGCAGTGTGTGTTACGCACACGAGTCAGCAACAAATCAAATCatctgaaagaaaaagaaaaaaacaaagagagagagtaaagaaatAATGCAATGCATTGAAATGAACTGAAAATACCTATCTATACTAACACAGAGCGACTGACCACAAAATCTGgtcaaagagaaagaaaaacagcactAAAACCATCAACACCACTATGTAATAATAATCCAATGTACAAATAAACCTAACACTATACATATACAAcaactttttttgcattgcactttttttttttaaaaacatcttaCACATGATATGGAAGTAGCTTCTATAATGTAGAGGCATACCTAAAATTGCAAGTATGGTCTTTAAAATATGTAGTACTTCTTAATTTCTATTAGAGTTTTGGCAACAAGGCTAGAACACGTAAAAAGACTTGTCCTTTGTGTTgtcttggcttttttttTGGGAGTTGGAGGGGTGATTGTCCATCAAGAGAGTGTGCCAAATTGAGAGAGGCATTAGCAGTGTGAATgaatgtatgagtgtgtgtgtgtgatgtgctaTAAGTGTTCTTGATTGTGGGTCTTGAAGAACTCGTGTACACAATCTGCCATTTGTAGGAGCGTGACGGCATGCACTTGTTTCACTACGACTGGTCAGTCCTGCTGAAAAGTCTTATCTGGGTCTTCTGTGAacgactgagtgagtgagtgtgtgagtgtctgtctgtctgtccgtccagCTGTCTCAGAGTTTCTCACAGGGGCGCTTGTCGGGAAATCCTCTCCACCCTTTGGCACCACGTCCC

Function

NR:

description
polysialoglycoprotein-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU292937 True 2229 lncRNA 0.37 3 12255862 12258135

Neighbor

gene id symbol gene type direction distance location
nkx6-2 nkx6-2,nkx6.2,LOC106576777,LOC106605004,LOC107745024 coding upstream 2301 12250834 ~ 12253561 (+)
cfap46 NA coding upstream 8983 12238371 ~ 12246879 (+)
LOC103039507 LOC108426770,LOC108262815,LOC107720583,LOC107686529,LOC107750130,LOC107565063,LOC107562391 coding upstream 555450 11628166 ~ 11700412 (+)
dntt dntt coding upstream 722336 11387036 ~ 11533526 (+)
LOC103038673 NA coding upstream 982884 11262619 ~ 11272978 (+)
stk32c stk32c,LOC102790870,LOC107670801 coding downstream 293171 12551306 ~ 12679668 (+)
LOC103045242 LOC103045242,LOC108426851,LOC108262946 coding downstream 437989 12696124 ~ 12705188 (+)
atp5s atp5s coding downstream 715476 12973611 ~ 12979567 (+)
atl1 atl1,LOC107705445,LOC107736665,LOC107682422,LOC107602974,LOC107553217 coding downstream 793732 13051867 ~ 13068228 (+)
tmx1 tmx1,txnd1,LOC107705366,LOC107654918,LOC107602932,LOC107736746 coding downstream 939015 13197150 ~ 13203195 (+)
G215771 NA non-coding upstream 155192 12099785 ~ 12100670 (+)
G215725 NA non-coding upstream 408931 11811659 ~ 11846931 (+)
LOC111195984 NA non-coding upstream 516463 11737601 ~ 11739399 (+)
LOC111196005 NA non-coding upstream 645549 11607475 ~ 11610313 (+)
G215698 NA non-coding upstream 714331 11541208 ~ 11541531 (+)
G215880 NA non-coding downstream 507171 12765306 ~ 12768025 (+)
G215926 NA non-coding downstream 662165 12920300 ~ 12922979 (+)
G215921 LOC108426848,LOC101069491,LOC101071647 non-coding downstream 679323 12937458 ~ 12963981 (+)
G215929 NA non-coding downstream 697265 12955400 ~ 12956296 (+)
G215930 NA non-coding downstream 711124 12969259 ~ 12972996 (+)
G215834 NA other upstream 49698 12205501 ~ 12206164 (+)
LOC111195936 NA other upstream 642739 11610318 ~ 11613123 (+)
cpeb3 cpeb3,LOC106604870 other upstream 1060439 11125700 ~ 11195423 (+)
G215513 polr1b other upstream 1307575 10947079 ~ 10948287 (+)
sprn sprn other upstream 1672774 10575495 ~ 10583088 (+)
G215886 NA other downstream 452503 12710638 ~ 12715905 (+)
G216053 nin other downstream 833611 13091746 ~ 13104042 (+)
LOC103038358 NA other downstream 1049902 13308037 ~ 13312487 (+)
trnay-gua_10 NA other downstream 1056977 13315112 ~ 13315200 (+)
trnay-gua_11 NA other downstream 1057940 13316075 ~ 13316162 (+)

Expression


Co-expression Network