G215880


Basic Information

Item Value
gene id G215880
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 12765306 ~ 12768025 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU292978
cCTTTGCtaaatataataacaaaaaaagcaatcTAGGTGTGAGTGCCTAGCATGTACGTACTTGAAAAGGCATGGACTATGTATTTGTtcacagaaataaacaaaaaataaacataataagaaAAGATTACATATAAAACCgttcattaaaacaaaacaaaaaggcaACTGTACTgcgaataaaatgtaaaataaacaacagtaaATATTCCTTCATGTCCTAGGCACTTGTGGTCTTTACAGTTGGTAGCGACCACTGAAATGTCCAACAGCCTACAACACTTCCCAAACTGCAAAATGAGATGTTACAATGGGTTGAATACATACATCTGTATAAAAGGATCACAGAGTACCTTCCTTAAAAAAACACgtataaaaaaagacagaacCTTCATCGCCAGTGAAGGCTCTCGTACGACcttctacattaaaataataagctgttatataaaatgacattttaagtGAAATTAGTGCACGGTCTCTGTATTAATGAGTGTAACTAGGACTTTGCCAAGCAAGTACTGTAATTACAGTGATGTGGTTATAAAACGCCGCTATGCAGAAATCTCGAATACATTGTTTATCATGGCTTAAGGAGTTTAGGCAATAAGATGTATTGCAAGTTCTCTCCATTGGAATATTATTGTCCCATATGAGCACCTCAAGGTAAAAAGAAACaggtaaatattaaaaatattcattaaGTACAATCAGAAAACCTCTCATTCTCCTTTcagcaacaaacacacaaaccacattCAGTATGTATTCACTGGctttttttcaatttgttttttgttctttcaaTCGCTAACCTGACACTGACGGAGAGTCCAGAGCTTACAGCTAAGTAACAGGCCATCACCCTTCATAACACACCTCTATTGGATTTACAGAACTGTGCACAAGTCAGAGACCATCCTTCCTTTACTTAATTTCCAGGCAAAATGTCCGTTAAAGAGTCACTTTAATACCTCAAGACAAAAAAGAATACATATTTATCAGAAATCAAGCCTTAACCTAAATatactgttttaatatttagtgtgcaCACCCTGCCTCAATGTTTAGGTGATTCAAGTTATTAATTTTTTGGGAGACATTTCTGAATATAGGGGTTGTCTTGCCTCGCAACAAAAGATTTAGAATGGGCTCTAGACCCACCATGACCCTGACCACAAAGTAAGAAATAGAGGATGAAGATGGATGGACAATTTGGCAGAAATTAGATACAAACTAGAAAATGCATTTCCTGAACTGCAAGTGTGACTGCAGCTCAGCAGCACTACTAATACATAAGATAAAATTGGTTGTCCaggtgttgcaaagtggttactaaggtgttaaCAAGGGGATGCTGAGGAGTTCCTAggcatttaaaaatgtgttgccATAATACAAATGGTTGCAAAGGTGTAGGTTAGTTTGAAATACGATTGTTAAAACAGGACTCTTAACAAATATGCAAGATCTTCTGGACTACCAACTCTGTCCCCATCAGATAAACTGATGCTATAACTCCTCAGTTGTAGTAGAGAGAACAATATTAAGCTTCACTCTAATTTCAGATCTtggtgtgaattttttttttaaaaagctctaatactgagacagaaaaaaacagaatagtGGACTGAGCACACCTAAGTTCAGACCTCAATATTACTGAAACTGTTTGACATGActtgaatataaaataaaagcagatttACTAAATACTGAAACGTCATATTGTATTTAGTGGTTGGAGCTTCTGTATGATTGTAAATATAAATCTGCTTTGCTTTTCCTGATGTTAAATTATGAATAACTTGCACTTATTGACTCTGaataaagtaaacaaataaaataaaataaatgttttctgaCTTTTGCACAGTAATGTATATACCAATGCAAAACTCAAGCAtgagcacatacacacacacacacgcacacgcaaacgcaaacacgcgcacacacacacacacacacttacatacataaCCAAAACATAACAAATATGCACAGCAACTTCAAGTCCTTGAGCCAAATATTAGCATGTTGTTGAGTCCAGCATTGTCAATGGCCTTTTGGGTTAAAGCCAGCTTGTGGGTTTCCACCCCTGACGTTGATGTGTTGGGATTGTCCTGCGCTGGCAGAGGTGAAAAGTTGAGGTCAAAGGTCGTACCCCTTGTAGAGGTAGCTCCTAGAAGTGCCTGAGGCTCCAGAGACGAAGAGGAGGAAGAATCTCAGGGTAGAAGAGACGCAAAACGAAGATCTAAGCGTAAACAGGCCATCGAAGGGGCAACAGGGTGTCCTTTCATGCCACGGTTAAGGCAAATAAAACTCTCTGGggtcctcacacacacacccacacacgcaCGCATACAGACGCAAACCAATACCGACAAATTGCCCTGATATCAACTTCTCCGtctgtcactcacacactcttgcTCCCTGAAATGTGTGGGACCCAGTCTGAGTGAGTCTGTGATTGTATCAGAGCAGAAATGGACAGATTTGGCTCCACCATATTGAGTGGAATGAGTTGCAGATGTGCTCCTCACACCTTGCTGTCCAGAGGAATGTCCCCCAGGGCCAGGACCAGCTCGCTGAATGATGGCCTCTCCTTAGGGCTGGGAGCCCAGCAGCGGCTCATCAGTTTGTAGATTTTTGAAGAACAGGCGTCAGGAGCAGAAAGCTTCAGAGTGC
>TU292979
cCTTTGCtaaatataataacaaaaaaagcaatcTAGGTGTGAGTGCCTAGCATGTACGTACTTGAAAAGGCATGGACTATGTATTTGTtcacagaaataaacaaaaaataaacataataagaaAAGATTACATATAAAACCgttcattaaaacaaaacaaaaaggcaACTGTACTgcgaataaaatgtaaaataaacaacagtaaATATTCCTTCATGTCCTAGGCACTTGTGGTCTTTACAGTTGGTAGCGACCACTGAAATGTCCAACAGCCTACAACACTTCCCAAACTGCAAAATGAGATGTTACAATGGGTTGAATACATACATCTGTATAAAAGGATCACAGAGTACCTTCCTTAAAAAAACACgtataaaaaaagacagaacCTTCATCGCCAGTGAAGGCTCTCGTACGACcttctacattaaaataataagctgttatataaaatgacattttaagtGAAATTAGTGCACGGTCTCTGTATTAATGAGTGTAACTAGGACTTTGCCAAGCAAGTACTGTAATTACAGTGATGTGGTTATAAAACGCCGCTATGCAGAAATCTCGAATACATTGTTTATCATGGCTTAAGGAGTTTAGGCAATAAGATGTATTGCAAGTTCTCTCCATTGGAATATTATTGTCCCATATGAGCACCTCAAGGTAAAAAGAAACaggtaaatattaaaaatattcattaaGTACAATCAGAAAACCTCTCATTCTCCTTTcagcaacaaacacacaaaccacattCAGTATGTATTCACTGGctttttttcaatttgttttttgttctttcaaTCGCTAACCTGACACTGACGGAGAGTCCAGAGCTTACAGCTAAGTAACAGGCCATCACCCTTCATAACACACCTCTATTGGATTTACAGAACTGTGCACAAGTCAGAGACCATCCTTCCTTTACTTAATTTCCAGGCAAAATGTCCGTTAAAGAGTCACTTTAATACCTCAAGACAAAAAAGAATACATATTTATCAGAAATCAAGCCTTAACCTAAATatactgttttaatatttagtgtgcaCACCCTGCCTCAATGTTTAGGTGATTCAAGTTATTAATTTTTTGGGAGACATTTCTGAATATAGGGGTTGTCTTGCCTCGCAACAAAAGATTTAGAATGGGCTCTAGACCCACCATGACCCTGACCACAAAGTAAGAAATAGAGGATGAAGATGGATGGACAATTTGGCAGAAATTAGATACAAACTAGAAAATGCATTTCCTGAACTGCAAGTGTGACTGCAGCTCAGCAGCACTACTAATACATAAGATAAAATTGGTTGTCCaggtgttgcaaagtggttactaaggtgttaaCAAGGGGATGCTGAGGAGTTCCTAggcatttaaaaatgtgttgccATAATACAAATGGTTGCAAAGGTGTAGGTTAGTTTGAAATACGATTGTTAAAACAGGACTCTTAACAAATATGCAAGATCTTCTGGACTACCAACTCTGTCCCCATCAGATAAACTGATGCTATAACTCCTCAGTTGTAGTAGAGAGAACAATATTAAGCTTCACTCTAATTTCAGATCTtggtgtgaattttttttttaaaaagctctaatactgagacagaaaaaaacagaatagtGGACTGAGCACACCTAAGTTCAGACCTCAATATTACTGAAACTGTTTGACATGActtgaatataaaataaaagcagatttACTAAATACTGAAACGTCATATTGTATTTAGTGGTTGGAGCTTCTGTATGATTGTAAATATAAATCTGCTTTGCTTTTCCTGATGTTAAATTATGAATAACTTGCACTTATTGACTCTGaataaagtaaacaaataaaataaaataaatgttttctgaCTTTTGCACAGTAATGTATATACCAATGCAAAACTCAAGCAtgagcacatacacacacacacacgcacacgcaaacgcaaacacgcgcacacacacacacacacttacatacataaCCAAAACATAACAAATATGCACAGCAACTTCAAGTCCTTGAGCCAAATATTAGCATGTTGTTGAGTCCAGCATTGTCAATGGCCTTTTGGGTTAAAGCCAGCTTGTGGGTTTCCACCCCTGACGTTGATGTGTTGGGATTGTCCTGCGCTGGCAGAGGTGAAAAGTTGAGGTCAAAGGTCGTACCCCTTGTAGAGGTAGCTCCTAGAAGTGCCTGAGGCTCCAGAGACGAAGAGGAGGAAGAATCTCAGGGTAGAAGAGACGCAAAACGAAGATCTAAGCGTAAACAGGCCATCGAAGGGGCAACAGGGTGTCCTTTCATGCCACGGTTAAGGCAAATAAAACTCTCTGGggtcctcacacacacacccacacacgcaCGCATACAGACGCAAACCAATACCGACAAATTGCCCTGATATCAACTTCTCCGtctgtcactcacacactcttgcTCCCTGAAATGTGTGGGACCCAGTCTGAGTGAGTCTGTGATTGTATCAGAGCAGAAATGGACAGATTTGGCTCCACCATATTGAGTGGAATGAGTTGCAGATGTGCTCCTCACACCTTGCTGTCCAGAGGAATGTCCCCCAGGGCCAGGACCAGCTCGCTGAATGATGGCCTCTCCTTAGGGCTGGGAGCCCAGCAGCGGCTCATCAGTTTGTAGATTTTTGAAGAACAGGCGTCAGGAGCAGAAAGCTTCAGAGTGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU292978 True 2700 lncRNA 0.39 2 12765306 12768025
TU292979 False 2698 lncRNA 0.39 2 12765306 12768025

Neighbor

gene id symbol gene type direction distance location
LOC103045242 LOC103045242,LOC108426851,LOC108262946 coding upstream 60118 12696124 ~ 12705188 (+)
stk32c stk32c,LOC102790870,LOC107670801 coding upstream 85638 12551306 ~ 12679668 (+)
nkx6-2 nkx6-2,nkx6.2,LOC106576777,LOC106605004,LOC107745024 coding upstream 511745 12250834 ~ 12253561 (+)
cfap46 NA coding upstream 518427 12238371 ~ 12246879 (+)
LOC103039507 LOC108426770,LOC108262815,LOC107720583,LOC107686529,LOC107750130,LOC107565063,LOC107562391 coding upstream 1064894 11628166 ~ 11700412 (+)
atp5s atp5s coding downstream 205586 12973611 ~ 12979567 (+)
atl1 atl1,LOC107705445,LOC107736665,LOC107682422,LOC107602974,LOC107553217 coding downstream 283842 13051867 ~ 13068228 (+)
tmx1 tmx1,txnd1,LOC107705366,LOC107654918,LOC107602932,LOC107736746 coding downstream 429125 13197150 ~ 13203195 (+)
frmd6 frmd6,LOC107654939,LOC107736757,LOC107683538 coding downstream 503391 13271416 ~ 13299019 (+)
trnat-ugu_90 NA coding downstream 579536 13347561 ~ 13347633 (+)
G215843 NA non-coding upstream 507171 12255862 ~ 12258135 (+)
G215771 NA non-coding upstream 664636 12099785 ~ 12100670 (+)
G215725 NA non-coding upstream 918375 11811659 ~ 11846931 (+)
LOC111195984 NA non-coding upstream 1025907 11737601 ~ 11739399 (+)
LOC111196005 NA non-coding upstream 1154993 11607475 ~ 11610313 (+)
G215926 NA non-coding downstream 152275 12920300 ~ 12922979 (+)
G215921 LOC108426848,LOC101069491,LOC101071647 non-coding downstream 169433 12937458 ~ 12963981 (+)
G215929 NA non-coding downstream 187375 12955400 ~ 12956296 (+)
G215930 NA non-coding downstream 201234 12969259 ~ 12972996 (+)
G215944 NA non-coding downstream 236222 13004247 ~ 13009722 (+)
G215886 NA other upstream 49401 12710638 ~ 12715905 (+)
G215834 NA other upstream 559142 12205501 ~ 12206164 (+)
LOC111195936 NA other upstream 1152183 11610318 ~ 11613123 (+)
cpeb3 cpeb3,LOC106604870 other upstream 1569883 11125700 ~ 11195423 (+)
G215513 polr1b other upstream 1817019 10947079 ~ 10948287 (+)
G216053 nin other downstream 323721 13091746 ~ 13104042 (+)
LOC103038358 NA other downstream 540012 13308037 ~ 13312487 (+)
trnay-gua_10 NA other downstream 547087 13315112 ~ 13315200 (+)
trnay-gua_11 NA other downstream 548050 13316075 ~ 13316162 (+)
LOC103033819 LOC108426824,LOC108263419,LOC107725444 other downstream 711151 13479176 ~ 13484371 (+)

Expression


Co-expression Network