G215930


Basic Information

Item Value
gene id G215930
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 12969259 ~ 12972996 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU293047
CAAACCagagccatagagagagagagttgcgtCAACTCCGTTCACTCCAATGGACCAGTTTTTTACAGCAATGGCGGACCGTGGAGCCTGTCAATAGTTCCCGGAAGTTAGCAGCAAATACTATCAGCACAGTGAAGCTGGAGCAGGATACACCATGTGTGGTCCACTTTTACAGGGTTCATTCTTCCGAACTACACAAGTAAACCCCATTTTATGTAATCTGTGCTGAttctttggtttatttacatgtgcaatgtactattttcctttagttgatttacatgtgttctgtactttgtttttctgtatgtagCCTCTCTATATTCTGATATCAGTCTTTAAAGTTATATATCATCTCatgtttgttgtaaaaataataaagctgttGCAAATAATGTGGTTCCTCTTTCTTAatccaaataattctgcatgaaaTATTCAGGTGGTGACTTAAGAATATTTGCagatctttgtatcctttgattaaattatttttgcagtaaactctAAATATATGCAAGCCAAAacttctccatcttcttttGAACCTAAAATTTTACTTGTAGCGACTGCATTTGCACAGTgtcatg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU293047 True 590 lncRNA 0.36 2 12969259 12972996

Neighbor

gene id symbol gene type direction distance location
LOC103045242 LOC103045242,LOC108426851,LOC108262946 coding upstream 264071 12696124 ~ 12705188 (+)
stk32c stk32c,LOC102790870,LOC107670801 coding upstream 289591 12551306 ~ 12679668 (+)
nkx6-2 nkx6-2,nkx6.2,LOC106576777,LOC106605004,LOC107745024 coding upstream 715698 12250834 ~ 12253561 (+)
cfap46 NA coding upstream 722380 12238371 ~ 12246879 (+)
LOC103039507 LOC108426770,LOC108262815,LOC107720583,LOC107686529,LOC107750130,LOC107565063,LOC107562391 coding upstream 1268847 11628166 ~ 11700412 (+)
atp5s atp5s coding downstream 615 12973611 ~ 12979567 (+)
atl1 atl1,LOC107705445,LOC107736665,LOC107682422,LOC107602974,LOC107553217 coding downstream 78871 13051867 ~ 13068228 (+)
tmx1 tmx1,txnd1,LOC107705366,LOC107654918,LOC107602932,LOC107736746 coding downstream 224154 13197150 ~ 13203195 (+)
frmd6 frmd6,LOC107654939,LOC107736757,LOC107683538 coding downstream 298420 13271416 ~ 13299019 (+)
trnat-ugu_90 NA coding downstream 374565 13347561 ~ 13347633 (+)
G215921 LOC108426848,LOC101069491,LOC101071647 non-coding upstream 5278 12937458 ~ 12963981 (+)
G215929 NA non-coding upstream 12963 12955400 ~ 12956296 (+)
G215926 NA non-coding upstream 46280 12920300 ~ 12922979 (+)
G215880 NA non-coding upstream 201234 12765306 ~ 12768025 (+)
G215843 NA non-coding upstream 711124 12255862 ~ 12258135 (+)
G215944 NA non-coding downstream 31251 13004247 ~ 13009722 (+)
G215951 NA non-coding downstream 55269 13028265 ~ 13050474 (+)
G216052 NA non-coding downstream 116465 13089461 ~ 13091233 (+)
G216054 NA non-coding downstream 147340 13120336 ~ 13124758 (+)
G216059 NA non-coding downstream 154930 13127926 ~ 13132520 (+)
G215886 NA other upstream 253354 12710638 ~ 12715905 (+)
G215834 NA other upstream 763095 12205501 ~ 12206164 (+)
LOC111195936 NA other upstream 1356136 11610318 ~ 11613123 (+)
cpeb3 cpeb3,LOC106604870 other upstream 1773836 11125700 ~ 11195423 (+)
G215513 polr1b other upstream 2020972 10947079 ~ 10948287 (+)
G216053 nin other downstream 118750 13091746 ~ 13104042 (+)
LOC103038358 NA other downstream 335041 13308037 ~ 13312487 (+)
trnay-gua_10 NA other downstream 342116 13315112 ~ 13315200 (+)
trnay-gua_11 NA other downstream 343079 13316075 ~ 13316162 (+)
LOC103033819 LOC108426824,LOC108263419,LOC107725444 other downstream 506180 13479176 ~ 13484371 (+)

Expression


Co-expression Network