G215951


Basic Information

Item Value
gene id G215951
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 13028265 ~ 13050474 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU293068
CTGCTTTTGGACATTAAGAACAAAGCCCTCATTGGGTGCAGGTCAAACATGGGTGGCTGCAATTCAGCGAGTTCTATTGACGTGATTCCAACAGCCCAGATGTCACACAACTGATTGTAACCTCCATTCTTCTCTACAGCAGCCACTTCAGGAGCCATCCAGTAGGGGGTGCCAATGAATGATTTCCTCTTGGCAATGGTGGCTGTTATTTTTGCTGCAACTCCAAAATCAGCTAGTTTGACATCTCCATTGTCAGTGAGCAAAATATTCGCCCCCTTGATATCTCTGTGCATCTTCCCTTTAGAGTGGAGATAACCTAGACcCTGTAACGTCTCTCTGCACACATAAGCAATCTGATGTTCAGACAGAGGACCCGTAACATGATAGATGTCCTGCAATGAACCTCCTCCACAGTACTCCATACAGATCCACAACTTTTCACGACAGAGGTAGCTGCCAAAGTAGGCCACTATGTTGTGATGAGTGCATTCTTTCACCATGAAGATTTCCTGTTGGATGATCGAGAAGTCATCTCCTGGCTCCAATTTAATGATCTTTACAGCTGCTAGCTCTCCCGTGGAGATGTTACGAGCCTTATACACATCTCCATATGTCCCACTCCCAACTCTCTGGATGAGCTCAAAGTCGTGCTGGGGGTTCCTGCGCTGAATCTCGCCGCTGGGCCTGGAAAGGGGATCCATTCTCCAGTTACTGGGGAGAACCACGCCGCTGGAAGTGATGATATGTGGGTGGGTTCTTAGTTTTCCAACTACTGCATCAAAGATCTCGCTTTTCTTGGGTCATTTTTAATTTCCACGGGAATACTCCATATCCGCATCAATGACGAGCACAAGCAACGTGTTCCTCAAGTTTTGACGTCCATTCTGTGTCGAAATAAACATCCCAACTCGGCCGCTTTCTCCACTTTCTAACTTCTGCCTCTTCCACCTGATCTGCTCCGTGTGTGTAGGATCAGCAACAGCAGACAGTCTGACCGTCCAGCCGGAGCT

Function

NR:

description
polysialoglycoprotein-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU293068 True 1010 lncRNA 0.48 11 13028265 13050474

Neighbor

gene id symbol gene type direction distance location
atp5s atp5s coding upstream 48698 12973611 ~ 12979567 (+)
LOC103045242 LOC103045242,LOC108426851,LOC108262946 coding upstream 323077 12696124 ~ 12705188 (+)
stk32c stk32c,LOC102790870,LOC107670801 coding upstream 348597 12551306 ~ 12679668 (+)
nkx6-2 nkx6-2,nkx6.2,LOC106576777,LOC106605004,LOC107745024 coding upstream 774704 12250834 ~ 12253561 (+)
cfap46 NA coding upstream 781386 12238371 ~ 12246879 (+)
atl1 atl1,LOC107705445,LOC107736665,LOC107682422,LOC107602974,LOC107553217 coding downstream 1393 13051867 ~ 13068228 (+)
tmx1 tmx1,txnd1,LOC107705366,LOC107654918,LOC107602932,LOC107736746 coding downstream 146676 13197150 ~ 13203195 (+)
frmd6 frmd6,LOC107654939,LOC107736757,LOC107683538 coding downstream 220942 13271416 ~ 13299019 (+)
trnat-ugu_90 NA coding downstream 297087 13347561 ~ 13347633 (+)
abcb10 abcb10,LOC102798660 coding downstream 331399 13381873 ~ 13393037 (+)
G215944 NA non-coding upstream 18543 13004247 ~ 13009722 (+)
G215930 NA non-coding upstream 55269 12969259 ~ 12972996 (+)
G215921 LOC108426848,LOC101069491,LOC101071647 non-coding upstream 64284 12937458 ~ 12963981 (+)
G215929 NA non-coding upstream 71969 12955400 ~ 12956296 (+)
G215926 NA non-coding upstream 105286 12920300 ~ 12922979 (+)
G216052 NA non-coding downstream 38987 13089461 ~ 13091233 (+)
G216054 NA non-coding downstream 69862 13120336 ~ 13124758 (+)
G216059 NA non-coding downstream 77452 13127926 ~ 13132520 (+)
G216058 NA non-coding downstream 77820 13128294 ~ 13128958 (+)
G216064 pygl,LOC104938237 non-coding downstream 88770 13139244 ~ 13143391 (+)
G215886 NA other upstream 312360 12710638 ~ 12715905 (+)
G215834 NA other upstream 822101 12205501 ~ 12206164 (+)
LOC111195936 NA other upstream 1415142 11610318 ~ 11613123 (+)
cpeb3 cpeb3,LOC106604870 other upstream 1832842 11125700 ~ 11195423 (+)
G215513 polr1b other upstream 2079978 10947079 ~ 10948287 (+)
G216053 nin other downstream 41272 13091746 ~ 13104042 (+)
LOC103038358 NA other downstream 257563 13308037 ~ 13312487 (+)
trnay-gua_10 NA other downstream 264638 13315112 ~ 13315200 (+)
trnay-gua_11 NA other downstream 265601 13316075 ~ 13316162 (+)
LOC103033819 LOC108426824,LOC108263419,LOC107725444 other downstream 428702 13479176 ~ 13484371 (+)

Expression


Co-expression Network