G216058


Basic Information

Item Value
gene id G216058
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 13128294 ~ 13128958 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU293208
CCACAGTGGCCCAGAGGAATCAGCAAAATATTAACCAGAGTCCATTGAAAGCTGTGTTATTGTAGAAAGCATTACAGTGCTAGTGCTATTTAAGCTGGTCACaaacatctcaaaatacacatgagtataatatgaaaaGACTGTACTAAATGTTACCCCAAAAATCATTTTACCCATCAGTTACTGGAGATTGGTCACAGTTTCATACAGTGATGGGGGCTGATGTTCGTAACAATGTGTGAAGGCACAGTTAGCACTATGTAAACATTACAGTAATACTGTGGAACAGTGGTCTTTATCCCTCCTCCTGGAGAGCTACTTTCCTGCAGACTTTGGATCATCCAACCGTATTCCATCCCACCCAACCCAAATTTGGGTTGAGTTGAAACCTACAGGAATGTAGCTCCTCAGGAAAAGGGCATTAGACATGTGCTGCTATGTGTGTTCAAATCTTGCGCAGTGCACGTGCTGTCTCCTCTATAGCTTCTCGTGGTTCACTGGGGGGCGGGATCTTCAGGTCAGTTGGCTCCACCCCCCATATTTGAGTGGCATAGTCTGTAATTGTGCGGTCGCTGGAGAATTTTCCAGCAGCAGCGATATTCTTAATCACCATTTGAGTCCATTCCT

Function

GO:

id name namespace
GO:0050878 regulation of body fluid levels biological_process
GO:0019538 protein metabolic process biological_process
GO:0030162 regulation of proteolysis biological_process
GO:0001775 cell activation biological_process
GO:0030168 platelet activation biological_process
GO:0007596 blood coagulation biological_process
GO:0007599 hemostasis biological_process
GO:0006508 proteolysis biological_process
GO:0050817 coagulation biological_process

KEGG:

id description
ko04610 Complement and coagulation cascades
ko05150 Staphylococcus aureus infection
ko05020 Prion disease

RNA

RNA id representative length rna type GC content exon number start site end site
TU293208 True 627 lncRNA 0.44 2 13128294 13128958

Neighbor

gene id symbol gene type direction distance location
atl1 atl1,LOC107705445,LOC107736665,LOC107682422,LOC107602974,LOC107553217 coding upstream 60066 13051867 ~ 13068228 (+)
atp5s atp5s coding upstream 148727 12973611 ~ 12979567 (+)
LOC103045242 LOC103045242,LOC108426851,LOC108262946 coding upstream 423106 12696124 ~ 12705188 (+)
stk32c stk32c,LOC102790870,LOC107670801 coding upstream 448626 12551306 ~ 12679668 (+)
nkx6-2 nkx6-2,nkx6.2,LOC106576777,LOC106605004,LOC107745024 coding upstream 874733 12250834 ~ 12253561 (+)
tmx1 tmx1,txnd1,LOC107705366,LOC107654918,LOC107602932,LOC107736746 coding downstream 68192 13197150 ~ 13203195 (+)
frmd6 frmd6,LOC107654939,LOC107736757,LOC107683538 coding downstream 142458 13271416 ~ 13299019 (+)
trnat-ugu_90 NA coding downstream 218603 13347561 ~ 13347633 (+)
abcb10 abcb10,LOC102798660 coding downstream 252915 13381873 ~ 13393037 (+)
LOC103031709 acta1,act2,LOC108430668,LOC102689871 coding downstream 268823 13397781 ~ 13401639 (+)
G216054 NA non-coding upstream 3536 13120336 ~ 13124758 (+)
G216052 NA non-coding upstream 37061 13089461 ~ 13091233 (+)
G215951 NA non-coding upstream 77820 13028265 ~ 13050474 (+)
G215944 NA non-coding upstream 118572 13004247 ~ 13009722 (+)
G215930 NA non-coding upstream 155298 12969259 ~ 12972996 (+)
G216064 pygl,LOC104938237 non-coding downstream 10286 13139244 ~ 13143391 (+)
G216073 LOC108263287,LOC108263288 non-coding downstream 76351 13205309 ~ 13237853 (+)
G216077 NA non-coding downstream 95851 13224809 ~ 13225105 (+)
G216100 NA non-coding downstream 172427 13301385 ~ 13302047 (+)
G216138 tbp,LOC107676577,LOC107725488,LOC107666436 non-coding downstream 336752 13465710 ~ 13471415 (+)
G216053 nin other upstream 24252 13091746 ~ 13104042 (+)
G215886 NA other upstream 412389 12710638 ~ 12715905 (+)
G215834 NA other upstream 922130 12205501 ~ 12206164 (+)
LOC111195936 NA other upstream 1515171 11610318 ~ 11613123 (+)
cpeb3 cpeb3,LOC106604870 other upstream 1932871 11125700 ~ 11195423 (+)
LOC103038358 NA other downstream 179079 13308037 ~ 13312487 (+)
trnay-gua_10 NA other downstream 186154 13315112 ~ 13315200 (+)
trnay-gua_11 NA other downstream 187117 13316075 ~ 13316162 (+)
LOC103033819 LOC108426824,LOC108263419,LOC107725444 other downstream 350218 13479176 ~ 13484371 (+)
spef1 spef1 other downstream 611555 13740513 ~ 13750306 (+)

Expression


Co-expression Network