G216059


Basic Information

Item Value
gene id G216059
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 13127926 ~ 13132520 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU293209
tatatatatatatatcttatatatatatctttttttacagtctctggtttagtGTATTCAGCCTATAATACACTAATCAAGCGTTTCATGATGACCATTTCCTTGTTATTAcacaccttttttattttttcttcatcacTAACTATAGAGGAGCACTTTGTAAGTTTATTATCAcagacagatttctttctttctctctgaatACTTCATTATCCTCCTTTGTTGTGCTGGCATGAGTGGATTAGACaatcatatgtgtgtgtaagtgtgtgtgtgtttaaagtacATACGGTTGTACATAGTGATGACATGGAGGCAGTTGAGGAGCTGTCTCTTGTACTCATGGATTCTCTTTACATGCACATCAAACATGGAAGCAGGATTTATCTTCACCTGGTATTCTTTCTCCAAATACTGCGCAAACTTCAGCTTATTGTCCTAAAGTCACATAGACACAAGCATGTA

Function

GO: NA

KEGG:

id description
ko04610 Complement and coagulation cascades

RNA

RNA id representative length rna type GC content exon number start site end site
TU293209 True 465 lncRNA 0.35 2 13127926 13132520

Neighbor

gene id symbol gene type direction distance location
atl1 atl1,LOC107705445,LOC107736665,LOC107682422,LOC107602974,LOC107553217 coding upstream 59698 13051867 ~ 13068228 (+)
atp5s atp5s coding upstream 148359 12973611 ~ 12979567 (+)
LOC103045242 LOC103045242,LOC108426851,LOC108262946 coding upstream 422738 12696124 ~ 12705188 (+)
stk32c stk32c,LOC102790870,LOC107670801 coding upstream 448258 12551306 ~ 12679668 (+)
nkx6-2 nkx6-2,nkx6.2,LOC106576777,LOC106605004,LOC107745024 coding upstream 874365 12250834 ~ 12253561 (+)
tmx1 tmx1,txnd1,LOC107705366,LOC107654918,LOC107602932,LOC107736746 coding downstream 64630 13197150 ~ 13203195 (+)
frmd6 frmd6,LOC107654939,LOC107736757,LOC107683538 coding downstream 138896 13271416 ~ 13299019 (+)
trnat-ugu_90 NA coding downstream 215041 13347561 ~ 13347633 (+)
abcb10 abcb10,LOC102798660 coding downstream 249353 13381873 ~ 13393037 (+)
LOC103031709 acta1,act2,LOC108430668,LOC102689871 coding downstream 265261 13397781 ~ 13401639 (+)
G216054 NA non-coding upstream 3168 13120336 ~ 13124758 (+)
G216052 NA non-coding upstream 36693 13089461 ~ 13091233 (+)
G215951 NA non-coding upstream 77452 13028265 ~ 13050474 (+)
G215944 NA non-coding upstream 118204 13004247 ~ 13009722 (+)
G215930 NA non-coding upstream 154930 12969259 ~ 12972996 (+)
G216064 pygl,LOC104938237 non-coding downstream 6724 13139244 ~ 13143391 (+)
G216073 LOC108263287,LOC108263288 non-coding downstream 72789 13205309 ~ 13237853 (+)
G216077 NA non-coding downstream 92289 13224809 ~ 13225105 (+)
G216100 NA non-coding downstream 168865 13301385 ~ 13302047 (+)
G216138 tbp,LOC107676577,LOC107725488,LOC107666436 non-coding downstream 333190 13465710 ~ 13471415 (+)
G216053 nin other upstream 23884 13091746 ~ 13104042 (+)
G215886 NA other upstream 412021 12710638 ~ 12715905 (+)
G215834 NA other upstream 921762 12205501 ~ 12206164 (+)
LOC111195936 NA other upstream 1514803 11610318 ~ 11613123 (+)
cpeb3 cpeb3,LOC106604870 other upstream 1932503 11125700 ~ 11195423 (+)
LOC103038358 NA other downstream 175517 13308037 ~ 13312487 (+)
trnay-gua_10 NA other downstream 182592 13315112 ~ 13315200 (+)
trnay-gua_11 NA other downstream 183555 13316075 ~ 13316162 (+)
LOC103033819 LOC108426824,LOC108263419,LOC107725444 other downstream 346656 13479176 ~ 13484371 (+)
spef1 spef1 other downstream 607993 13740513 ~ 13750306 (+)

Expression


Co-expression Network