G216073 (LOC108263287,LOC108263288)


Basic Information

Item Value
gene id G216073
gene name LOC108263287,LOC108263288
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 13205309 ~ 13237853 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU293236
TTGAAAGTCTTCTTTCTTTGTTCAGCATAAATGTTGGCGTCAATCTTCGAACGAACAAAGTAGAATTTCTTCTCCATTTTGACGATCTCTGCTGCTAAATGAGCATGGCATTCTCTGAAGCGATCTGACGCGAAGATGATGAAAAAATCATAGCGCTGAAACTCAACCTGTTTAAGATACTCCTCTGCTTTGAAGTTGGGTGTTCCAATACCAGGGAGATCCCACAGTTTGACATTTGGGTATTTTTTATATGGGTAAGCTGTAGGCTTCATAGTGGTCTCTACCACACCAGTTGCTGCAGAGTCCTCATCTTCATCCCCCATTCCTCTAAAGGCATTGATGAAGGTGGATTTTCCGGAACCAGACTCTCCTGTCACAGCGATGTTCAGTTCCACACGATCCTGTTGTTCTAAATAGTCCTTAATCTTGCCAACAGCTGATGGCAGATCTTCATAGGCCAGTGCCTCTTTAATTTCATCAGGACTAATAATTTCAAAGGAGTTGTCTGCATCCAGGTACTCATTCACTTCTTCAGTGGTGATAATTTCTTCCAtct
>TU293237
CTTCAATGCAGTTTTTTCGGATAGCATCCAGTGTATTTTGCTTGTTGAAAGTCTTCTTTCTTTGTTCAGCATAAATGTTGGCGTCAATCTTCGAACGAACAAAGTAGAATTTCTTCTCCATTTTGACGATCTCTGCTGCTAAATGAGCATGGCATTCTCTGAAGCGATCTGACGCGAAGATGATGAAAAAATCATAGCGCTGAAACTCAACCTGTTTAAGATACTCCTCTGCTTTGAAGTTGGGTGTTCCAATACCAGGGAGATCCCACAGTTTGACATTTGGGTATTTTTTATATGGGTAAGCTGTAGGCTTCATAGTGGTCTCTACCACACCAGTTGCTGCAGAGTCCTCATCTTCATCCCCCATTCCTCTAAAGGCATTGATGAAGGTGGATTTTCCGGAACCAGACTCTCCTGTCACAGCGATGTTCAGTTCCACACGATCCTGTTGTTCTAAATAGTCCTTAATCTTGCCAACAGCTGATGGCAGATCTTCATAGGCCAGTGCCTCTTTAATTTCATCAGGACTAATAATTTCAAAGGAGTTGTCTGCATCCAGGTACTCATTCACTTCTTCAGTGGTGATAATTTCTTCCAtct
>TU293240
CTTCAATGCAGTTTTTTCGGATAGCATCCAGTGTATTTTGCTTGTTGAAAGTCTTCTTTCTTTGTTCAGCATAAATGTTGGCGTCAATCTTCGAACGAACAAAGTAGAATTTCTTCTCCATTTTGACGATCTCTGCTGCTAAATGAGCATGGCATTCTCTGAAGCGATCTGACGCGAAGATGATGAAAAAATCATAGCGCTGAAACTCAACCTGTTTAAGATACTCCTCTGCTTTGAAGTTGGGTGTTCCAATACCAGGGAGATCCCACAGTTTGACATTTGGGTATTTTTTATATGGGTAAGCTGTAGGCTTCATAGTGGTCTCTACCACACCAGTTGCTGCAGAGTCCTCATCTTCATCCCCCATTCCTCTAAAGGCATTGATGAAGGTGGATTTTCCGGAACCAGACTCTCCTGTCACAGCGATGTTCAGTTCCACACGATCCTGTTGTTCTAAATAGTCCTTAATCTTGCCAACAGCTGATGGCAGATCTTCATAGGCCAGTGCCTCTTTAATTTCATCAGGACTAATAATTTCAAAGGAGTTGTCTGCATCCAGGTACTCATTCACTTCTTCAGTGGTGATAATTTCTTCCAtct
>TU293242
TTCTGTGCAGTCTTTGCGGATAGCATCCAGTGTCTTTTGTTCGTTGAaagtcttctttcttttttcagcaGAAATGTTGCTGTCAATCTTTGAGCGAACAAAGTAGAATCTCTTATCCATTTTGACGATCTCTGCTGCTAAATGAGCATGGCATTCTCTGAAGCGATCTGATGCGATGATTATGAAAAAATCATAGCGCTGAAACTTAACCTGCTGCAGATACTCATCTGCTTTGAAGTTGGGTGTTCCAATACCAGGGAGATCCCACAATTGGACATTTGGGTATTTTTTATATGGGTAAGCTGTAGGCTCCATAGTCGTCTCAACGACACCAGTTTCTGCAGAGCCTTCATCCTCATCACCAATTCCTCTAAAGGCATTGATGAAGGTGGATTTTCCGGAACCAGACTCTCCTGTCACAGCGATGTTCAGTTCCACACGATCCTGTTGTTCTAAATAGTCCTTAATCTTGCCAACAGCTGATGGCAGATCTTCATAGGCCAGTGCCTCTTTAATTTCATCAGGACTAATAATTTCAAAGGAGTTGTCTGCATCCAGGTACTCATTCACTTCTTCAGTGGTGATAATTTCTTCCAtct

Function

NR:

description
PREDICTED: interferon-inducible GTPase 5-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU293236 False 556 lncRNA 0.42 2 13235958 13237853
TU293237 True 600 lncRNA 0.42 2 13235914 13237853
TU293240 False 600 lncRNA 0.42 2 13235914 13237853
TU293242 False 599 lncRNA 0.42 2 13205309 13237853

Neighbor

gene id symbol gene type direction distance location
tmx1 tmx1,txnd1,LOC107705366,LOC107654918,LOC107602932,LOC107736746 coding upstream 2114 13197150 ~ 13203195 (+)
atl1 atl1,LOC107705445,LOC107736665,LOC107682422,LOC107602974,LOC107553217 coding upstream 137081 13051867 ~ 13068228 (+)
atp5s atp5s coding upstream 225742 12973611 ~ 12979567 (+)
LOC103045242 LOC103045242,LOC108426851,LOC108262946 coding upstream 500121 12696124 ~ 12705188 (+)
stk32c stk32c,LOC102790870,LOC107670801 coding upstream 525641 12551306 ~ 12679668 (+)
frmd6 frmd6,LOC107654939,LOC107736757,LOC107683538 coding downstream 33563 13271416 ~ 13299019 (+)
trnat-ugu_90 NA coding downstream 109708 13347561 ~ 13347633 (+)
abcb10 abcb10,LOC102798660 coding downstream 144020 13381873 ~ 13393037 (+)
LOC103031709 acta1,act2,LOC108430668,LOC102689871 coding downstream 159928 13397781 ~ 13401639 (+)
LOC103032026 ccsap coding downstream 165755 13403608 ~ 13409451 (+)
G216064 pygl,LOC104938237 non-coding upstream 61918 13139244 ~ 13143391 (+)
G216059 NA non-coding upstream 72789 13127926 ~ 13132520 (+)
G216058 NA non-coding upstream 76351 13128294 ~ 13128958 (+)
G216054 NA non-coding upstream 80551 13120336 ~ 13124758 (+)
G216052 NA non-coding upstream 114076 13089461 ~ 13091233 (+)
G216100 NA non-coding downstream 63532 13301385 ~ 13302047 (+)
G216138 tbp,LOC107676577,LOC107725488,LOC107666436 non-coding downstream 227857 13465710 ~ 13471415 (+)
G216139 NA non-coding downstream 235526 13473379 ~ 13474113 (+)
G216141 NA non-coding downstream 237283 13475136 ~ 13475336 (+)
G216143 NA non-coding downstream 241891 13479744 ~ 13480026 (+)
G216053 nin other upstream 101267 13091746 ~ 13104042 (+)
G215886 NA other upstream 489404 12710638 ~ 12715905 (+)
G215834 NA other upstream 999145 12205501 ~ 12206164 (+)
LOC111195936 NA other upstream 1592186 11610318 ~ 11613123 (+)
cpeb3 cpeb3,LOC106604870 other upstream 2009886 11125700 ~ 11195423 (+)
LOC103038358 NA other downstream 70184 13308037 ~ 13312487 (+)
trnay-gua_10 NA other downstream 77259 13315112 ~ 13315200 (+)
trnay-gua_11 NA other downstream 78222 13316075 ~ 13316162 (+)
LOC103033819 LOC108426824,LOC108263419,LOC107725444 other downstream 241323 13479176 ~ 13484371 (+)
spef1 spef1 other downstream 502660 13740513 ~ 13750306 (+)

Expression


Co-expression Network