G216100


Basic Information

Item Value
gene id G216100
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 13301385 ~ 13302047 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU293294
TCAGCAGCACTTTTCAATGCTTTCATGCATGTGGGCATTCAGTTCAGGTTCTTGTACATTCTTTTGAATAGCAGTGCATCCTCTGTAGTGGTGCAGTTGTTCCCCCATGGCCCTGATTCTGTGATCCATACTTTATATTACTTCAGAGTGACCGTACagttctcactctttttctctcagacTTTACATTtgttaacacagtaaacatttcTATAATATATGTTTCTTACATTTCGATCAGTTAATAAAACTgcagtttataaaaaaatgaccGATAAATCAGATATCTAACGTTGTATTCTGATATGTGATGTTTTCTCTCCTGCTGGGatttaaaaaaactctttttaggATTTATTTTGGTATGTGTCCCTCAAGAGCTACTGCACAAGCAAAATATAACTGGACTGAACCATAACCAAGTTCTGCCTACAGATAATGTCCACGTCTGTTCTTCTCCCTcttttatttgtctgtctgcAGTTCGTTACAGCCCTTTCTGTGAAAGGAAAttcccttgtaaaaaaaaaacaaaagtaaagcaaattattttttcttttttttcttttgtaagcCCTTTTGATTGATGCTTTTGTTCCCATTATGAAGTGTGGTGCGTGCCTTGCTGGTACTAATGTCCTCAAATGTACGCAATAAAAGGTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU293294 True 663 lncRNA 0.36 1 13301385 13302047

Neighbor

gene id symbol gene type direction distance location
frmd6 frmd6,LOC107654939,LOC107736757,LOC107683538 coding upstream 2366 13271416 ~ 13299019 (+)
tmx1 tmx1,txnd1,LOC107705366,LOC107654918,LOC107602932,LOC107736746 coding upstream 98190 13197150 ~ 13203195 (+)
atl1 atl1,LOC107705445,LOC107736665,LOC107682422,LOC107602974,LOC107553217 coding upstream 233157 13051867 ~ 13068228 (+)
atp5s atp5s coding upstream 321818 12973611 ~ 12979567 (+)
LOC103045242 LOC103045242,LOC108426851,LOC108262946 coding upstream 596197 12696124 ~ 12705188 (+)
trnat-ugu_90 NA coding downstream 45514 13347561 ~ 13347633 (+)
abcb10 abcb10,LOC102798660 coding downstream 79826 13381873 ~ 13393037 (+)
LOC103031709 acta1,act2,LOC108430668,LOC102689871 coding downstream 95734 13397781 ~ 13401639 (+)
LOC103032026 ccsap coding downstream 101561 13403608 ~ 13409451 (+)
pdcd2 pdcd2 coding downstream 160282 13462329 ~ 13464974 (+)
G216073 LOC108263287,LOC108263288 non-coding upstream 63532 13205309 ~ 13237853 (+)
G216077 NA non-coding upstream 76280 13224809 ~ 13225105 (+)
G216064 pygl,LOC104938237 non-coding upstream 157994 13139244 ~ 13143391 (+)
G216059 NA non-coding upstream 168865 13127926 ~ 13132520 (+)
G216058 NA non-coding upstream 172427 13128294 ~ 13128958 (+)
G216138 tbp,LOC107676577,LOC107725488,LOC107666436 non-coding downstream 163663 13465710 ~ 13471415 (+)
G216139 NA non-coding downstream 171332 13473379 ~ 13474113 (+)
G216141 NA non-coding downstream 173089 13475136 ~ 13475336 (+)
G216143 NA non-coding downstream 177697 13479744 ~ 13480026 (+)
G216153 NA non-coding downstream 206815 13508862 ~ 13510402 (+)
G216053 nin other upstream 197343 13091746 ~ 13104042 (+)
G215886 NA other upstream 585480 12710638 ~ 12715905 (+)
G215834 NA other upstream 1095221 12205501 ~ 12206164 (+)
LOC111195936 NA other upstream 1688262 11610318 ~ 11613123 (+)
cpeb3 cpeb3,LOC106604870 other upstream 2105962 11125700 ~ 11195423 (+)
LOC103038358 NA other downstream 5990 13308037 ~ 13312487 (+)
trnay-gua_10 NA other downstream 13065 13315112 ~ 13315200 (+)
trnay-gua_11 NA other downstream 14028 13316075 ~ 13316162 (+)
LOC103033819 LOC108426824,LOC108263419,LOC107725444 other downstream 177129 13479176 ~ 13484371 (+)
spef1 spef1 other downstream 438466 13740513 ~ 13750306 (+)

Expression


Co-expression Network