G216138 (tbp,LOC107676577,LOC107725488,LOC107666436)


Basic Information

Item Value
gene id G216138
gene name tbp,LOC107676577,LOC107725488,LOC107666436
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 13465710 ~ 13471415 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU293340
ttttaaatggataaGATTTATTTGCCTGTGTTTCAAAGCAAATGTACAACTGAGGCAGAAAACGTTACATTAGCAGTGCTTTACAAGAGGCTATGTAACCCGTATAATGAATGCACAGTAAATGTTGTCCCAACAAACCAAATTTCAGGCTCTttgctgttccaaaaaaacagaCGTATAGGGACTAGGACCTTAAAGTGTTTACCTGTGCCCTTTTTAAAAGGCCACTGCAAGGAGCACCAAAATTAAGCCAGCTGTTGTAAATTTGTTGAGCCAGTGCTTCCTAATGTCTAAATTCATTATAGGGGTTAGGGCTGCATGGAAGACTCACAGTATTTCAGTAAgttacattaaaataacaagaaaaatgtCGCATTCAGACTAAACAAGCCAAAGCATAGTCAAAGCCAGATTTGAACAATCACACTACTCAGTGCATCAACTTACTTGCAACTCTGCATCTGAAAGAGTGTCAACTGTGATCCTGACATTTCTCTTGTAAGGTGACAGTCTTAGCACCTCTCAGGACTGCTGAGAGTAACCTGcctatttattaaaggaatgtGTGGTATAATACAAATAGATGGCATAAACAGTAAAACCAATATAGAATTTGTATAAGAACATGGACTGTGACGGCCACAAattgctgaataaaaaaaaaattaaaaaggtaaTAAAAAGTTTTCCCATTTCACTGTAAGTGAAAAGAACAAGTCCttatttacataattaaaattaaactataagaGCAGATGTTGTAGTACTGCCAACAAGGGTAACAGGGAAGGTCCACCCAAATGCAATTATGTTGTCTTTCTGAATCCTTTTAAGATAGGGTAAATATTTTCAAATGCTTCATAGATTTCACCTCTGACCTTCGCACCTGTAAGTACAACTTTGCCggaaacaaaaattaaaaggaCAATTCTGGGTTTGATCATTCTGTAGATTAACCCAGGGAATAATTCAGGTTCGTAActgCTGAACTGTTGGTGGGTGAGAACCAAGCCCTCTAGTCGAATTGGGAACTTGACGTCACAACTTCCAACCATGTTTTGAATCTTGAAGTCCAGAAATTTTGCGGGGAATCCCAGTTTTTTGTACTACTCGGGCATACTTTCTGGCTGCGAGGCGAGACTGTTCCTCACTCTTAGCTCCTGTGCACACCATCTTGCCTGAACTAAAAATCAGAGCAGTTGTTCTGGGTTCTCGTATTCTCATGATGACGGCAGCAAAACgctTAGGATTGTACTCAGCGTTTCTGGCTCGAAGTGCTATTGTCTTCAGGTCAAGTTTGCACCCCAAGTTTACCGTTGATACAATATTCTGTAGTTGGGGGACAATGCCAGAACTCTCAGAGGCTGGTGTGGCAGGTGTAATGGGCGTCATGGGGGTTAAAGGGGCGGTGGTATACAGTGGGGTGTTGCCTGGTAGTACTGTGGTGGTTGAAACTGCTTGCGAGTGGTAAAGTTGGGGTGTCTGGCCTGATGTACCCACAATTCCACCCTGCTGTTGAGAAgcctgttgctgctgctgctgttgttgctgcaTCTGCTGCTCCTCTAGAAGTGACAGACTGTTGGTGTTCTGCACTGGTTGTGGTGTAAGCCCAGTGCCATACGGCATCATTGGGCTAAAGATGGGCATGCCAGGCGTCATAGCACCCTGTGGAGACGACAGGCTTTGTGGAAACGGGGGCAAGCTGTTGTTCTGCTCCATGCTGTCCAGTTATGAACCCAGCAGCAGATTAACAATCTAGACAGAGGTGTGAGCAGAGATGGTGTTCAGATGTCCAGCTTTCTcccctctctctgtgtctccggGTGCGCGCAAAACACGGGACTTCACAGCAAGTTCCGCC

Function

symbol description
tbp Enables DNA binding activity. Involved in gastrulation and mRNA catabolic process. Acts upstream of or within transcription by RNA polymerase II. Predicted to be located in nucleus. Predicted to be part of transcription factor TFIID complex. Is expressed in several structures, including eye; heart; integument; liver; and pleuroperitoneal region. Human ortholog(s) of this gene implicated in late onset Parkinson's disease; schizophrenia; spinocerebellar ataxia type 17; and type 1 diabetes mellitus. Orthologous to human TBP (TATA-box binding protein).

NR:

description
PREDICTED: TATA-box-binding protein

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU293340 True 1864 lncRNA 0.43 8 13465710 13471415

Neighbor

gene id symbol gene type direction distance location
pdcd2 pdcd2 coding upstream 736 13462329 ~ 13464974 (+)
LOC103032026 ccsap coding upstream 56259 13403608 ~ 13409451 (+)
LOC103031709 acta1,act2,LOC108430668,LOC102689871 coding upstream 64071 13397781 ~ 13401639 (+)
abcb10 abcb10,LOC102798660 coding upstream 72673 13381873 ~ 13393037 (+)
trnat-ugu_90 NA coding upstream 118077 13347561 ~ 13347633 (+)
LOC103035225 rab1a,LOC103035225,LOC107601860,LOC107676578,LOC107666439,LOC105005759,LOC107725478 coding downstream 14105 13485520 ~ 13494058 (+)
sertad2 sertad2 coding downstream 70534 13541949 ~ 13594514 (+)
lgalsl lgalsl,LOC107601863,LOC107676594,LOC107666541,LOC107552938 coding downstream 136874 13608289 ~ 13613437 (+)
echs1 echs1,LOC107743519,LOC107676592,LOC107601864,LOC107666378 coding downstream 160783 13632198 ~ 13636389 (+)
fuom fuom coding downstream 168605 13640020 ~ 13645008 (+)
G216100 NA non-coding upstream 163663 13301385 ~ 13302047 (+)
G216073 LOC108263287,LOC108263288 non-coding upstream 227857 13205309 ~ 13237853 (+)
G216077 NA non-coding upstream 240605 13224809 ~ 13225105 (+)
G216064 pygl,LOC104938237 non-coding upstream 322319 13139244 ~ 13143391 (+)
G216059 NA non-coding upstream 333190 13127926 ~ 13132520 (+)
G216139 NA non-coding downstream 1964 13473379 ~ 13474113 (+)
G216141 NA non-coding downstream 3721 13475136 ~ 13475336 (+)
G216143 NA non-coding downstream 8329 13479744 ~ 13480026 (+)
G216153 NA non-coding downstream 37447 13508862 ~ 13510402 (+)
G216165 NA non-coding downstream 59761 13531176 ~ 13531577 (+)
trnay-gua_11 NA other upstream 149548 13316075 ~ 13316162 (+)
trnay-gua_10 NA other upstream 150510 13315112 ~ 13315200 (+)
LOC103038358 NA other upstream 153223 13308037 ~ 13312487 (+)
G216053 nin other upstream 361668 13091746 ~ 13104042 (+)
G215886 NA other upstream 749805 12710638 ~ 12715905 (+)
LOC103033819 LOC108426824,LOC108263419,LOC107725444 other downstream 7761 13479176 ~ 13484371 (+)
spef1 spef1 other downstream 269098 13740513 ~ 13750306 (+)
gsto1 gsto1 other downstream 870817 14342232 ~ 14347333 (+)
bcl11a bcl11a,bcl11aa,LOC107666449,LOC107601892,LOC107743494,LOC107655449,LOC107559339 other downstream 1250985 14722400 ~ 14780313 (+)
borcs7 borcs7 other downstream 3533126 17004541 ~ 17007537 (+)

Expression


Co-expression Network